Evidence map›Paper›PMID 31138702›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

The long noncoding RNA

Jonathan J Kotzin, Fany Iseka, Jasmine Wright, Megha G Basavappa, Megan L Clark, Mohammed-Alkhatim Ali, Mohamed S Abdel-Hakeem, Tanner F Robertson, Walter K Mowel, Leonel Joannas and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 62 citations in OpenAlex.

  1. Review
  2. Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  15. From thymus to tissues and tumors: A review of T-cell biology.The Journal of allergy and clinical immunology · 2023
    Review
  16. Article
  17. Article
  18. Article
  19. LNCing RNA to immunity.Trends in immunology · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Jonathan J KotzinDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Fany IsekaDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Jasmine WrightDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Megha G BasavappaDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Megan L ClarkDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Mohammed-Alkhatim AliInstitute for Immunology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Mohamed S Abdel-HakeemInstitute for Immunology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0003-0226-3464
Tanner F RobertsonDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Walter K MowelDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Leonel JoannasDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Vanessa D NealDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Sean P SpencerDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Camille M SyrettInstitute for Immunology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Montserrat C AngueraInstitute for Immunology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Adam WilliamsDepartment of Genetics and Genome Sciences, The Jackson Laboratory for Genomic Medicine, Farmington, CT 06032.
E John WherryInstitute for Immunology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Jorge Henao-MejiaDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104; jhena@pennmedicine.upenn.edu.
University of Pennsylvania · USParker Institute for Cancer Immunotherapy · USCairo University · EGChildren's Hospital of Philadelphia · USJackson Laboratory · US

Funding

Virology CoreU19AI082630 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI GEORG Michael LAUER · 2009 to 2026
$48.1M
Synergies among inhibitory receptors in tolerance, cancer & antiviral immunityP01AI108545 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Dario AA Vignali · 2015 to 2026
$30.8M
Sequencing and Viral Evolution CoreU19AI117950 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI WHERRY, E. JOHN · 2015 to 2019
$12.0M
Radiation and checkpoint blockade for cancer immune therapyP01CA210944 · NCI · UNIVERSITY OF PENNSYLVANIA · PI VONDERHEIDE, ROBERT H · 2017 to 2022
$11.5M
Training Program in Investigative HepatologyT32DK007356 · NIDDK · YALE UNIVERSITY · PI MICHAEL H NATHANSON · 1986 to 2026
$7.4M
HEMATOPOIESIS TRAINING GRANTT32DK007780 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI TONG, WEI · 1999 to 2023
$6.7M
VMD-PhD Training in Infectious Disease-Related ResearchT32AI070077 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Michael Lee Atchison · 2008 to 2026
$3.5M
Regulation of short-lived myeloid cells by the novel long non-coding RNA MorrbidR01HL136572 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI HENAO-MEJIA, JORGE · 2017 to 2021
$2.0M
Cellular and transcriptional control of exhausted CD8 T cells lineage dynamicsR01AI105343 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI WHERRY, E. JOHN · 2014 to 2017
$1.6M
Regulation of adipose tissue inflammation by the miR-181 familyR21DK111755 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI HENAO-MEJIA, JORGE · 2016 to 2018
$604k
The Function of lncRNAs in Airway Epithelial CellsR21AI133440 · NIAID · JACKSON LABORATORY · PI WILLIAMS, ADAM · 2018 to 2019
$520k
The Role of the lncRNA MORRBID in Controlling Dendritic Cell Lifespan and Adaptive ImmunityR21AI135221 · NIAID · JACKSON LABORATORY · PI WILLIAMS, ADAM · 2018 to 2019
$520k
NCI NIH HHS P01 CA210944NHLBI NIH HHS F30 HL138739NHLBI NIH HHS R01 HL136572NIAID NIH HHS F31 AI124538NIAID NIH HHS P01 AI108545NIAID NIH HHS R01 AI105343NIAID NIH HHS R21 AI128060NIAID NIH HHS R21 AI133440NIAID NIH HHS R21 AI135221NIAID NIH HHS T32 AI070077NIAID NIH HHS U19 AI082630NIAID NIH HHS U19 AI117950NIDDK NIH HHS F30 DK094708NIDDK NIH HHS R21 DK111755NIDDK NIH HHS T32 DK007356NIDDK NIH HHS T32 DK007780
6 · The paper itself

Abstract

The transcriptional programs that regulate CD8 T-cell differentiation and function in the context of viral infections or tumor immune surveillance have been extensively studied; yet how long noncoding RNAs (lncRNAs) and the loci that transcribe them contribute to the regulation of CD8 T cells during viral infections remains largely unexplored. Here, we report that transcription of the lncRNA

Indexed as

AnimalsCD8-Positive T-LymphocytesCell DifferentiationInterferon Type ILymphocyte ActivationLymphocytic ChoriomeningitisLymphocytic choriomeningitis virusMaleMiceMice, Inbred C57BLMice, TransgenicPhosphatidylinositol 3-KinasesProto-Oncogene Proteins c-bcl-2Receptors, Antigen, T-CellRNA, Long NoncodingSignal TransductionInterferon Type IPhosphatidylinositol 3-KinasesProto-Oncogene Proteins c-bcl-2Receptors, Antigen, T-CellRNA, Long NoncodingCD8 T cellslncRNAsviral infection

Identifiers

PMID31138702
PMCPMC6575676
OpenAlexW2947296232

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.