Evidence map›Paper›PMID 31138696›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Historical and genomic data reveal the influencing factors on global transmission velocity of plague during the Third Pandemic.

Lei Xu, Leif C Stige, Herwig Leirs, Simon Neerinckx, Kenneth L Gage, Ruifu Yang, Qiyong Liu, Barbara Bramanti, Katharine R Dean, Hui Tang and 3 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Molecular Tracing and Comparative Genomics Analysis ofPathogens (Basel, Switzerland) · 2025
    Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Transoceanic pathogen transfer in the age of sail and steam.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Zoonoses (Shannon, Ireland) · 2023
    Article
  17. Article
  18. No evidence for persistent natural plague reservoirs in historical and modern Europe.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Lei XuState Key Laboratory of Integrated Management on Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China.
Leif C StigeCentre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, N-0316 Oslo, Norway.
Herwig LeirsEvolutionary Ecology Group, Department of Biology, University of Antwerp, 2020 Antwerp, Belgium.ORCID 0000-0002-7612-5024
Simon NeerinckxEvolutionary Ecology Group, Department of Biology, University of Antwerp, 2020 Antwerp, Belgium.
Kenneth L GageBacterial Diseases Branch, Division of Vector-Borne Disease, Centers for Disease Control and Prevention, Fort Collins, CO 80523.
Ruifu YangState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, 100071 Beijing, China.
Qiyong LiuState Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, 102206 Beijing, China.
Barbara BramantiCentre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, N-0316 Oslo, Norway.ORCID 0000-0002-5433-663X
Katharine R DeanCentre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, N-0316 Oslo, Norway.ORCID 0000-0003-2262-0385
Hui TangDepartment of Geosciences, University of Oslo, N-0316 Oslo, Norway.
Zhe SunCentre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, N-0316 Oslo, Norway.
Nils Chr StensethCentre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, N-0316 Oslo, Norway; n.c.stenseth@ibv.uio.no zhangzb@ioz.ac.cn.
Zhibin ZhangState Key Laboratory of Integrated Management on Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, 100101 Beijing, China; n.c.stenseth@ibv.uio.no zhangzb@ioz.ac.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quantitative knowledge about which natural and anthropogenic factors influence the global spread of plague remains sparse. We estimated the worldwide spreading velocity of plague during the Third Pandemic, using more than 200 years of extensive human plague case records and genomic data, and analyzed the association of spatiotemporal environmental factors with spreading velocity. Here, we show that two lineages, 2.MED and 1.ORI3, spread significantly faster than others, possibly reflecting differences among strains in transmission mechanisms and virulence. Plague spread fastest in regions with low population density and high proportion of pasture- or forestland, findings that should be taken into account for effective plague monitoring and control. Temperature exhibited a nonlinear, U-shaped association with spread speed, with a minimum around 20 °C, while precipitation showed a positive association. Our results suggest that global warming may accelerate plague spread in warm, tropical regions and that the projected increased precipitation in the Northern Hemisphere may increase plague spread in relevant regions.

Indexed as

AnimalsClimate ChangeDatabases, FactualGenome, BacterialGenomicsHumansPandemicsPlagueVirulenceYersinia pestisclimate changeglobal transmission velocityhistorical and genomic dataThird PandemicYersinia pestis

Identifiers

PMID31138696
PMCPMC6584904

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.