Evidence map›Paper›PMID 31138654›Full record

ArticleThe Journal of biological chemistry2019

Microhomology-based CRISPR tagging tools for protein tracking, purification, and depletion.

Da-Wei Lin, Benjamin P Chung, Jia-Wei Huang, Xiaorong Wang, Lan Huang, Peter Kaiser

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Efficient tagging of endogenous proteins in human cell lines for structural studies by single-particle cryo-EM.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Article
  9. Review
  10. Article
  11. Acute Protein Depletion Strategies to Functionally Dissect the 3D Genome.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  12. Review
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Da-Wei LinDepartments of Biological Chemistry and.
Benjamin P ChungDepartments of Biological Chemistry and.
Jia-Wei HuangDepartments of Biological Chemistry and.
Xiaorong WangPhysiology and Biophysics, University of California, Irvine, California 92617.
Lan HuangPhysiology and Biophysics, University of California, Irvine, California 92617.
Peter KaiserDepartments of Biological Chemistry and. Electronic address: pkaiser@uci.edu.

Funding

Ubiquitin SignalingR01GM066164 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI KAISER, PETER · 2002 to 2022
$7.4M
Proteomics of the Proteasome Interacting NetworksR01GM074830 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUANG, LAN · 2005 to 2022
$6.1M
Molecular concepts that monitor methionine metabolismR01GM128432 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI KAISER, PETER · 2018 to 2021
$1.3M
Methionine Dependency of CancerR21CA242270 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI KAISER, PETER · 2019 to 2020
$370k
NCI NIH HHS R21 CA242270NIGMS NIH HHS R01 GM066164NIGMS NIH HHS R01 GM074830NIGMS NIH HHS R01 GM128432
6 · The paper itself

Abstract

Work in yeast models has benefitted tremendously from the insertion of epitope or fluorescence tags at the native gene locus to study protein function and behavior under physiological conditions. In contrast, work in mammalian cells largely relies on overexpression of tagged proteins because high-quality antibodies are only available for a fraction of the mammalian proteome. CRISPR/Cas9-mediated genome editing has recently emerged as a powerful genome-modifying tool that can also be exploited to insert various tags and fluorophores at gene loci to study the physiological behavior of proteins in most organisms, including mammals. Here we describe a versatile toolset for rapid tagging of endogenous proteins. The strategy utilizes CRISPR/Cas9 and microhomology-mediated end joining repair for efficient tagging. We provide tools to insert 3×HA, His

Indexed as

AnimalsClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsDNA End-Joining RepairFluorescent Antibody TechniqueFluorescent DyesGene EditingHEK293 CellsHumansProtein EngineeringFluorescent DyesAIDauxinCRISPR/Casepitope tagginggene expressionmicrohomologyprotein degradationprotein engineeringprotein purification

Identifiers

PMID31138654
PMCPMC6635434

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.