Evidence map›Paper›PMID 31138650›Full record

ArticleThe Journal of biological chemistry2019

Productive reorientation of a bound oxime reactivator revealed in room temperature X-ray structures of native and VX-inhibited human acetylcholinesterase.

Oksana Gerlits, Xiaotian Kong, Xiaolin Cheng, Troy Wymore, Donald K Blumenthal, Palmer Taylor, Zoran Radić, Andrey Kovalevsky

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. From Mechanisms to Materials: Oximate Reactivity and Emerging Strategies for Organophosphate Detoxification.Chemphyschem : a European journal of chemical physics and physical chemistry · 2026
    Review
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  9. Malleability of the SARS-CoV-2 3CL MStructure (London, England : 1993) · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 1 country.

Oksana GerlitsFrom the Bredesen Center, University of Tennessee, Knoxville, Tennessee 37996.
Xiaotian Kongthe Division of Medicinal Chemistry and Pharmacognosy, College of Pharmacy, The Ohio State University, Columbus, Ohio 43210.
Xiaolin Chengthe Division of Medicinal Chemistry and Pharmacognosy, College of Pharmacy, The Ohio State University, Columbus, Ohio 43210.
Troy Wymorethe Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109.
Donald K Blumenthalthe Department of Pharmacology and Toxicology, University of Utah, Salt Lake City, Utah 84112.ORCID 0000-0002-8614-1167
Palmer Taylorthe Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California 92093-0751, and.ORCID 0000-0002-3081-131X
Zoran Radićthe Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California 92093-0751, and.
Andrey Kovalevskythe Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831 kovalevskyay@ornl.gov.ORCID 0000-0003-4459-9142
The Ohio State University · USUniversity of California San Diego · USOak Ridge National Laboratory · USUniversity of Michigan · USUniversity of Tennessee at Knoxville · USUniversity of Utah · US

Funding

Accelerated AChE Reactivator Design by Mechanistic Neutron Scattering StudiesU01NS083451 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RADIC, ZORAN · 2014 to 2018
$3.4M
Overlay independent X-ray data analysis for enhanced oxime OP-ChE reactivationR21NS098998 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RADIC, ZORAN · 2016 to 2017
$310k
NINDS NIH HHS R21 NS098998NINDS NIH HHS U01 NS083451
6 · The paper itself

Abstract

Exposure to organophosphorus compounds (OPs) may be fatal if untreated, and a clear and present danger posed by nerve agent OPs has become palpable in recent years. OPs inactivate acetylcholinesterase (AChE) by covalently modifying its catalytic serine. Inhibited AChE cannot hydrolyze the neurotransmitter acetylcholine leading to its build-up at the cholinergic synapses and creating an acute cholinergic crisis. Current antidotes, including oxime reactivators that attack the OP-AChE conjugate to free the active enzyme, are inefficient. Better reactivators are sought, but their design is hampered by a conformationally rigid portrait of AChE extracted exclusively from 100K X-ray crystallography and scarcity of structural knowledge on human AChE (hAChE). Here, we present room temperature X-ray structures of native and VX-phosphonylated hAChE with an imidazole-based oxime reactivator, RS-170B. We discovered that inhibition with VX triggers substantial conformational changes in bound RS-170B from a "nonproductive" pose (the reactive aldoxime group points away from the VX-bound serine) in the reactivator-only complex to a "semi-productive" orientation in the VX-modified complex. This observation, supported by concurrent molecular simulations, suggested that the narrow active-site gorge of hAChE may be significantly more dynamic than previously thought, allowing RS-170B to reorient inside the gorge. Furthermore, we found that small molecules can bind in the choline-binding site hindering approach to the phosphorous of VX-bound serine. Our results provide structural and mechanistic perspectives on the reactivation of OP-inhibited hAChE and demonstrate that structural studies at physiologically relevant temperatures can deliver previously overlooked insights applicable for designing next-generation antidotes.

Indexed as

AcetylcholinesteraseBinding SitesCatalytic DomainCholinesterase InhibitorsCrystallography, X-RayDensity Functional TheoryHumansMolecular Dynamics SimulationOrganothiophosphorus CompoundsOximesRecombinant ProteinsTemperatureAcetylcholinesteraseCholinesterase InhibitorsOrganothiophosphorus CompoundsOximesRecombinant ProteinsVX-agentacetylcholinesterase (AChE)molecular modelingoxime reactivatorprotein chemical modificationreactivation mechanismRS-170Bstructure-functionVX-inhibitionX-ray crystallography

Identifiers

PMID31138650
PMCPMC6615692
OpenAlexW2947106388

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.