Evidence map›Paper›PMID 31138194›Full record

ArticleBMC medical genomics2019

Comprehensive analysis of key genes and microRNAs in radioresistant nasopharyngeal carcinoma.

Ya Guo, Yang Zhang, Shu Juan Zhang, Yi Nan Ma, Yun He

Open access · goldAbstract read
In one paragraph

Article in BMC medical genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

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  8. The Role of hsa-miR-21 and Its Target Genes Involved in Nasopharyngeal Carcinoma.Asian Pacific journal of cancer prevention : APJCP · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ya GuoDepartment of Oncology, The Second Affiliated Hospital of Medical College, Xi'an Jiao Tong University, 157 xi wu road, Xi'an, 710004, People's Republic of China. gy8569851@163.com.
Yang ZhangDepartment of Oncology, The Second Affiliated Hospital of Medical College, Xi'an Jiao Tong University, 157 xi wu road, Xi'an, 710004, People's Republic of China.
Shu Juan ZhangDepartment of Oncology, Kashi No.2 peoples' Hospital of Xin Jiang, Kashi, 844000, Xin jiang, China.
Yi Nan MaDepartment of Oncology, The Second Affiliated Hospital of Medical College, Xi'an Jiao Tong University, 157 xi wu road, Xi'an, 710004, People's Republic of China.
Yun HeDepartment of Oncology, The Second Affiliated Hospital of Medical College, Xi'an Jiao Tong University, 157 xi wu road, Xi'an, 710004, People's Republic of China.
Second Affiliated Hospital of Xi'an Jiaotong University · CNXi'an Jiaotong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRadioresistance is one of the main obstacle limiting the therapeutic efficacy and prognosis of patients, the molecular mechanisms of radioresistance is still unclear. The purpose of this study was to identify the key genes and miRNAs and to explore their potential molecular mechanisms in radioresistant nasopharyngeal carcinoma.

methodsIn this study, we analysis the differentially expressed genes and microRNA based on the database of GSE48501 and GSE48502, and then employed bioinformatics to analyze the pathways and GO terms in which DEGs and DEMS target genes are involved. Moreover, Construction of protein-protein interaction network and identification of hub genes. Finally, analyzed the biological networks for validated target gene of hub miRNAs.

resultsA total of 373 differentially expressed genes (DEGs) and 14 differentially expressed microRNAs (DEMs) were screened out. The up-regulated gene JUN was overlap both in DEGs and publicly available studies, which was potentially targeted by three miRNAs, including hsa-miR-203, hsa-miR-24 and hsa-miR-31. Moreover, Pathway analysis showed that both up-regulated gene and DEMs target genes were enriched in TGF-beta signaling pathway, Hepatitis B, Pathways in cancer and p53 signaling pathway. Finally, we further constructed protein-protein interaction network (PPI) of DEGs and analyzed the biological networks for above mentioned common miRNAs, the result indicated that JUN was a core hub gene in PPI network, hsa-miR-24 and its target gene were significantly enriched in P53 signaling pathway.

conclusionsThese results might provide new clues to improve the radiosensitivity of Nasopharyngeal Carcinoma.

Indexed as

Computational BiologyDatabases, GeneticGene Expression ProfilingGene OntologyGene Regulatory NetworksHumansMicroRNAsNasopharyngeal CarcinomaProtein Interaction MappingRadiation ToleranceSignal TransductionTumor Suppressor Protein p53MicroRNAsTumor Suppressor Protein p53microRNA, gene expression omnibus differentially expressed genes, bioinformatics analysisNasopharyngeal carcinoma

Identifiers

PMID31138194
PMCPMC6537399
OpenAlexW2947929775

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.