Evidence map›Paper›PMID 31138105›Full record

ArticleBMC bioinformatics2019

Is automatic detection of hidden knowledge an anomaly?

Judita Preiss

Abstract read
In one paragraph

Article in BMC bioinformatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
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0citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Judita PreissUniversity of Salford, The School of Computing, Science & Engineering, Newton Building, Salford, Greater Manchester, M5 4WT, UK. J.Preiss@salford.ac.uk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe quantity of documents being published requires researchers to specialize to a narrower field, meaning that inferable connections between publications (particularly from different domains) can be missed. This has given rise to automatic literature based discovery (LBD). However, unless heavily filtered, LBD generates more potential new knowledge than can be manually verified and another form of selection is required before the results can be passed onto a user. Since a large proportion of the automatically generated hidden knowledge is valid but generally known, we investigate the hypothesis that non trivial, interesting, hidden knowledge can be treated as an anomaly and identified using anomaly detection approaches.

resultsTwo experiments are conducted: (1) to avoid errors arising from incorrect extraction of relations, the hypothesis is validated using manually annotated relations appearing in a thesaurus, and (2) automatically extracted relations are used to investigate the hypothesis on publication abstracts. These allow an investigation of a potential upper bound and the detection of limitations yielded by automatic relation extraction.

conclusionWe apply one-class SVM and isolation forest anomaly detection algorithms to a set of hidden connections to rank connections by identifying outlying (interesting) ones and show that the approach increases the F

Indexed as

KnowledgeAlgorithmsAutomationHumansKnowledge DiscoveryPublicationsSemanticsAnomaly detectionLiterature based discoveryUnified medical language system

Identifiers

PMID31138105
PMCPMC6538538

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.