ArticleBMC bioinformatics2019
Is automatic detection of hidden knowledge an anomaly?
Article in BMC bioinformatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
backgroundThe quantity of documents being published requires researchers to specialize to a narrower field, meaning that inferable connections between publications (particularly from different domains) can be missed. This has given rise to automatic literature based discovery (LBD). However, unless heavily filtered, LBD generates more potential new knowledge than can be manually verified and another form of selection is required before the results can be passed onto a user. Since a large proportion of the automatically generated hidden knowledge is valid but generally known, we investigate the hypothesis that non trivial, interesting, hidden knowledge can be treated as an anomaly and identified using anomaly detection approaches.
resultsTwo experiments are conducted: (1) to avoid errors arising from incorrect extraction of relations, the hypothesis is validated using manually annotated relations appearing in a thesaurus, and (2) automatically extracted relations are used to investigate the hypothesis on publication abstracts. These allow an investigation of a potential upper bound and the detection of limitations yielded by automatic relation extraction.
conclusionWe apply one-class SVM and isolation forest anomaly detection algorithms to a set of hidden connections to rank connections by identifying outlying (interesting) ones and show that the approach increases the F
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