Evidence map›Paper›PMID 31137849›Full record

ArticleInternational journal of molecular sciences2019

Characterization of Histone Deacetylase Expression Within In Vitro and In Vivo Bladder Cancer Model Systems.

Jenna M Buckwalter, Wilson Chan, Lauren Shuman, Thomas Wildermuth, Justine Ellis-Mohl, Vonn Walter, Joshua I Warrick, Xue-Ru Wu, Matt Kaag, Jay D Raman and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Epigenetic Priming and Development of New Combination Therapy Approaches.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  5. Article
  6. High-Content Drug Discovery Targeting Molecular Bladder Cancer Subtypes.International journal of molecular sciences · 2022
    Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Epigenetics of Urological Cancers.International journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Jenna M BuckwalterDepartment of Pathology and Laboratory Medicine, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA. jbuckwalter@pennstatehealth.psu.edu.
Wilson ChanDepartment of Surgery, Division of Urology, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA. Wilson.chan@unlv.edu.
Lauren ShumanDepartment of Pathology and Laboratory Medicine, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA. lshuman@pennstatehealth.psu.edu.
Thomas WildermuthDepartment of Pathology and Laboratory Medicine, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA. twildermuth1@pennstatehealth.psu.edu.
Justine Ellis-MohlDepartment of Pathology and Laboratory Medicine, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA. justinemarie0112@outlook.com.
Vonn WalterDepartment of Public Health Sciences, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA. vwalter1@pennstatehealth.psu.edu.
Joshua I WarrickDepartment of Pathology and Laboratory Medicine, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA. jwarrick@pennstatehealth.psu.edu.
Xue-Ru WuDepartments of Urology and Pathology, New York University, New York, NY 10010, USA. Xue-Ru.Wu@nyulangone.org.
Matt KaagDepartment of Surgery, Division of Urology, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA. mkaag@pennstatehealth.psu.edu.
Jay D RamanDepartment of Surgery, Division of Urology, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA. jraman@pennstatehealth.psu.edu.
David J DeGraffDepartment of Pathology and Laboratory Medicine, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA. ddegraff@pennstatehealth.psu.edu.
Pennsylvania State University · USNew York University · US

Funding

Reagent/Service CoreP01CA165980 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TANG, ERIC MOON-SHONG M. · 2013 to 2023
$13.5M
BLR&D Research Career Scientist Award ApplicationIK6BX004479 · VA · VA MEDICAL CENTER · PI WU, XUE-RU · 2019 to 2025
–
BLRD VA IK6 BX004479NCI NIH HHS P01 CA165980
6 · The paper itself

Abstract

Epigenetic aberrations are prominent in bladder cancer (BC) and contribute to disease pathogenesis. We characterized histone deacetylase (HDAC) expression, a family of deacetylation enzymes, in both in vitro and in vivo BC model systems and analyzed expression data from The Cancer Genome Atlas (TCGA). Quantitative real-time polymerase chain reaction (qRT-PCR) and western blotting analysis was used to determine the expression status of Class I and II HDACs in ten human BC cell lines, while qRT-PCR was used to determine HDAC expression in 24 human tumor specimens. The TCGA cohort consists of 408 muscle invasive BC (MIBC) clinical samples and analysis of this data set identified expression of

Indexed as

AnimalsCell Line, TumorGene Expression Regulation, NeoplasticHistone DeacetylasesHumansMiceUrinary BladderUrinary Bladder NeoplasmsHistone Deacetylasesbladder cancerheterogeneityhistone deacetylases

Identifiers

PMID31137849
PMCPMC6567299
OpenAlexW2946427219

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.