Evidence map›Paper›PMID 31137550›Full record

ArticleInternational journal of molecular sciences2019

Deep Insight into the Transcriptome of the Single Silk Gland of

Run Shi, Sanyuan Ma, Ting He, Jian Peng, Tong Zhang, Xiaoxu Chen, Xiaogang Wang, Jiasong Chang, Qingyou Xia, Ping Zhao

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  6. Juvenile hormone regulates silk gene expression by mCellular and molecular life sciences : CMLS · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Run ShiBiological Science Research Center, Southwest University, Chongqing 400716, China. shirun186@163.com.
Sanyuan MaBiological Science Research Center, Southwest University, Chongqing 400716, China. masy@swu.edu.cn.
Ting HeState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400716, China. hetingar@163.com.
Jian PengBiological Science Research Center, Southwest University, Chongqing 400716, China. theppone@163.com.
Tong ZhangBiological Science Research Center, Southwest University, Chongqing 400716, China. zt137703197@email.swu.edu.cn.
Xiaoxu ChenBiological Science Research Center, Southwest University, Chongqing 400716, China. chenxiaoxu95@126.com.
Xiaogang WangBiological Science Research Center, Southwest University, Chongqing 400716, China. wangyang217804@126.com.
Jiasong ChangBiological Science Research Center, Southwest University, Chongqing 400716, China. jiasongchang@163.com.
Qingyou XiaBiological Science Research Center, Southwest University, Chongqing 400716, China. xiaqy@swu.edu.cn.ORCID 0000-0002-9263-2886
Ping ZhaoBiological Science Research Center, Southwest University, Chongqing 400716, China. zhaop@swu.edu.cn.
Southwest University · CN

Funding

Chongqing Research program of basic Research and Frontier Technology cstc2017jcyjAX0349Chongqing Research program of basic Research and Frontier Technology cstc2018jcyjAX0471National Natural Science Foundation of China 31530071National Natural Science Foundation of China 31802011
6 · The paper itself

Abstract

The silk gland synthesizes and secretes a large amount of protein and stores liquid silk protein at an extremely high concentration. Interestingly, silk proteins and serine protease inhibitors are orderly arranged in the silk gland lumen and cocoon shells. Silk fiber formation and the spinning mechanism have not been fully elucidated. Therefore, we conducted a comparative transcriptome analysis of seven segments of the single silk gland to characterize internal changes in the silk gland during the 5th instar of mature larvae. In total, 3121 differentially expressed genes were identified in the seven segments. Genes highly expressed in the middle silk gland (MSG) were mainly involved in unsaturated fatty acid biosynthesis, fatty acid metabolism, apoptosis-fly, and lysosome pathways, whereas genes highly expressed in the posterior silk gland (PSG) were mainly involved in ribosome, proteasome, citrate cycle, and glycolysis/gluconeogenesis pathways. Thus, the MSG and PSG differ greatly in energy source use and function. Further, 773 gradually upregulated genes (from PSG to MSG) were involved in energy metabolism, silk protein synthesis, and secretion, suggesting that these genes play an important role in silk fiber formation. Our findings provide insights into the mechanism of silk protein synthesis and transport and silk fiber formation.

Indexed as

TranscriptomeAnimalsBombyxExocrine GlandsSilkSilkBombyx morigradually upregulated genessingle silk glandtranscriptome

Identifiers

PMID31137550
PMCPMC6567255
OpenAlexW2945576245

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.