Evidence map›Paper›PMID 31136637›Full record

ArticlePLoS pathogens2019

Structure of a functional cap-binding domain in Rift Valley fever virus L protein.

Nadja Gogrefe, Sophia Reindl, Stephan Günther, Maria Rosenthal

Abstract read
In one paragraph

Article in PLoS pathogens, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
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  19. Distribution and Molecular Identification ofPathogens (Basel, Switzerland) · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nadja GogrefeDepartment of Virology, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.
Sophia ReindlDepartment of Virology, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.
Stephan GüntherDepartment of Virology, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.ORCID 0000-0002-6562-0230
Maria RosenthalDepartment of Virology, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.ORCID 0000-0003-2986-936X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rift Valley fever virus (RVFV) belongs to the family of Phenuiviridae within the order of Bunyavirales. The virus may cause fatal disease both in livestock and humans, and therefore, is of great economical and public health relevance. In analogy to the influenza virus polymerase complex, the bunyavirus L protein is assumed to bind to and cleave off cap structures of cellular mRNAs to prime viral transcription. However, even though the presence of an endonuclease in the N-terminal domain of the L protein has been demonstrated for several bunyaviruses, there is no evidence for a cap-binding site within the L protein. We solved the structure of a C-terminal 117 amino acid-long domain of the RVFV L protein by X-ray crystallography. The overall fold of the domain shows high similarity to influenza virus PB2 cap-binding domain and the putative non-functional cap-binding domain of reptarenaviruses. Upon co-crystallization with m7GTP, we detected the cap-analogue bound between two aromatic side chains as it has been described for other cap-binding proteins. We observed weak but specific interaction with m7GTP rather than GTP in vitro using isothermal titration calorimetry. The importance of m7GTP-binding residues for viral transcription was validated using a RVFV minigenome system. In summary, we provide structural and functional evidence for a cap-binding site located within the L protein of a virus from the Bunyavirales order.

Indexed as

Amino Acid SequenceCrystallizationCrystallography, X-RayHumansModels, MolecularProtein ConformationProtein DomainsRift Valley fever virusRNA Cap AnalogsRNA CapsRNA, MessengerRNA, ViralSequence HomologyViral Proteins7-methylguanosine triphosphateRNA Cap AnalogsRNA CapsRNA, MessengerRNA, ViralViral Proteins

Identifiers

PMID31136637
PMCPMC6555543

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.