Evidence map›Paper›PMID 31136598›Full record

ArticlePloS one2019

Nucleotide diversity patterns at the DREB1 transcriptional factor gene in the genome donor species of wheat (Triticum aestivum L).

Yi Xu, Fang-Yao Sun, Chun Ji, Quan-Wen Hu, Cheng-Yu Wang, De-Xiang Wu, Genlou Sun

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Yi XuCollege of Agronomy, Anhui Agricultural University, Hefei, Anhui, China.
Fang-Yao SunCollege of Agronomy, Anhui Agricultural University, Hefei, Anhui, China.
Chun JiCollege of Agronomy, Anhui Agricultural University, Hefei, Anhui, China.
Quan-Wen HuCollege of Agronomy, Anhui Agricultural University, Hefei, Anhui, China.
Cheng-Yu WangCollege of Agronomy, Anhui Agricultural University, Hefei, Anhui, China.
De-Xiang WuCollege of Agronomy, Anhui Agricultural University, Hefei, Anhui, China.
Genlou SunCollege of Agronomy, Anhui Agricultural University, Hefei, Anhui, China.ORCID 0000-0001-9144-6072

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bread wheat (AABBDD) originated from the diploid progenitor Triticum urartu (AA), a relative of Aegilops speltoides (BB), and Ae. tauschii (DD). The DREB1 transcriptional factor plays key regulatory role in low-temperature tolerance. The modern breeding strategies resulted in serious decrease of the agricultural biodiversity, which led to a loss of elite genes underlying abiotic stress tolerance in crops. However, knowledge of this gene's natural diversity is largely unknown in the genome donor species of wheat. We characterized the dehydration response element binding protein 1 (DREB1) gene-diversity pattern in Ae. speltoides, Ae. tauschii, T. monococcum and T. urartu. The highest nucleotide diversity value was detected in Ae. speltoides, followed by Ae. tauschii and T. monococcum. The lowest nucleotide diversity value was observed in T. urartu. Nucleotide diversity and haplotype data might suggest no reduction of nucleotide diversity during T. monococcum domestication. Alignment of the 68 DREB1 sequences found a large-size (70 bp) insertion/deletion in the accession PI486264 of Ae. speltoides, which was different from the copy of sequences from other accessions of Ae. speltoides, suggesting a likely existence of two different ancestral Ae. speltoides forms. Implication of sequences variation of Ae. speltoides on origination of B genome in wheat was discussed.

Indexed as

Gene Expression Regulation, PlantGenetic VariationGenome, PlantHaplotypesBase SequenceDehydrationPlant ProteinsStress, PhysiologicalTranscription FactorsTriticumPlant ProteinsTranscription Factors

Identifiers

PMID31136598
PMCPMC6538315

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.