ArticleMolecular ecology resources2019
Rapid identification and interpretation of gene-environment associations using the new R.SamBada landscape genomics pipeline.
Article in Molecular ecology resources, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
17 citing papers in PubMed.
- Mapping genomic adaptation to environmental heterogeneity in Indian native goat populations through landscape genomics.Mammalian genome : official journal of the International Mammalian Genome Society · 2026Article
- Re-Interpreting Genetic Offset: Quantifying the Least Required Evolutionary Rate Under Climate Change at the Mediterranean Range Margin of European Beech.Evolutionary applications · 2026Article
- Contrasting whole-genome diversity patterns and adaptation in honeybees from two southern European glacial refugia.iScience · 2026Article
- RDAforest: Identifying Environmental Drivers of Polygenic Adaptation.Molecular ecology resources · 2025Article
- Contribution of Range-Wide and Short-Scale Chemical Soil Variation to Local Adaptation in a Tropical Montane Forest Tree.Evolutionary applications · 2025Article
- Genomic Signals of Local Adaptation Associated With Environmental Variables inEcology and evolution · 2025Article
- Biological Processes Underlying Genetic Adaptation of Larches to Cold and Dry Winter Conditions in Eastern Siberia.Ecology and evolution · 2025Article
- Integrating very high resolution environmental proxies in genotype-environment association studies.Evolutionary applications · 2024Article
- Article
- Deciphering local adaptation of native Indian cattle (3 Biotech · 2023Article
- Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition.Biological reviews of the Cambridge Philosophical Society · 2022Review
- Population connectivity and genetic offset in the spawning coral Acropora digitifera in Western Australia.Molecular ecology · 2022Article
- Landscape Genomics in Tree Conservation Under a Changing Environment.Frontiers in plant science · 2022Review
- The Quest for Genes Involved in Adaptation to Climate Change in Ruminant Livestock.Animals : an open access journal from MDPI · 2021Review
- Seascape genomics as a new tool to empower coral reef conservation strategies: An example on north-western PacificEvolutionary applications · 2020Article
- Sampling strategy optimization to increase statistical power in landscape genomics: A simulation-based approach.Molecular ecology resources · 2020Article
- Rapid identification and interpretation of gene-environment associations using the new R.SamBada landscape genomics pipeline.Molecular ecology resources · 2019Article
Corrections and comments
- Commented on by
Authors and funding
13 authors.
Funding
Abstract
samβada is a genome-environment association software, designed to search for signatures of local adaptation. However, pre- and postprocessing of data can be labour-intensive, preventing wider uptake of the method. We have now developed R.SamBada, an r-package providing a pipeline for landscape genomic analysis based on samβada, spanning from the retrieval of environmental conditions at sampling locations to gene annotation using the Ensembl genome browser. As a result, R.SamBada standardizes the landscape genomics pipeline and eases the search for candidate genes of local adaptation, enhancing reproducibility of landscape genomic studies. The efficiency and power of the pipeline is illustrated using two examples: sheep populations from Morocco with no evident population structure and Lidia cattle from Spain displaying population substructuring. In both cases, R.SamBada enabled rapid identification and interpretation of candidate genes, which are further discussed in the light of local adaptation. The package is available in the r CRAN package repository and on GitHub (github.com/SolangeD/R.SamBada).
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.