Evidence map›Paper›PMID 31135600›Full record

ArticleMelanoma research2020

Enrichment of melanoma-associated T cells in 6-thioguanine-resistant T cells from metastatic melanoma patients.

Cindy L Zuleger, Michael A Newton, Xiuyu Ma, Irene M Ong, Qinglin Pei, Mark R Albertini

Open access · greenAbstract read
In one paragraph

Article in Melanoma research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. SURROGATE SELECTION OVERSAMPLES EXPANDED T CELL CLONOTYPES.The annals of applied statistics · 2025
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Cindy L ZulegerUniversity of Wisconsin Carbone Cancer Center, University of Wisconsin School of Medicine and Public Health.
Michael A NewtonUniversity of Wisconsin Carbone Cancer Center, University of Wisconsin School of Medicine and Public Health.
Xiuyu MaDepartments of Biostatistics and Medical Informatics.
Irene M OngUniversity of Wisconsin Carbone Cancer Center, University of Wisconsin School of Medicine and Public Health.
Qinglin PeiDepartment of Biostatistics, University of Florida, Gainesville, Florida, USA.
Mark R AlbertiniUniversity of Wisconsin Carbone Cancer Center, University of Wisconsin School of Medicine and Public Health.
University of Wisconsin Carbone Cancer Center · USInstitute for Medical Informatics and Biostatistics · CHUniversity of Florida · US

Funding

UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI AMY TRENTHAM-DIETZ · 1985 to 2026
$142.6M
STATISTICAL METHODS FOR MOLECULAR CANCER DATAR01CA064364 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI NEWTON, MICHAEL A · 2000 to 2006
$695k
NCI NIH HHS P30 CA014520NCI NIH HHS R01 CA064364
6 · The paper itself

Abstract

This study examines whether 6-thioguanine resistant T cells (mutant) from metastatic melanoma patients are enriched for melanoma-associated T cells compared to T cells obtained analogously without thioguanine selection (wild-type). Melanoma-associated antigen pentamer staining was performed on 5 tumour and 9 peripheral blood samples from metastatic melanoma patients. T cell receptor beta chain repertoire was examined via Sanger sequencing of mutant and wild-type in blood and tumour from metastatic melanoma patients at times of tumour progression (n = 8) and via Illumina sequencing in tumour derived T cells and in uncultured T cells (uncultured), wild-type and mutant from blood before and after immune checkpoint blockade (n = 1). Mutant from tumour (3 of 5; P < 0.001), but not blood (0 of 9), were enriched compared to wild-type for binding melanoma-associated antigen pentamers. T cell receptor beta analysis in patients with tumour progression (n = 8) detected increased melanoma associated T cells in mutant compared to wild-type from blood (Monte Carlo P = 10). Comparison of blood samples before and after immune checkpoint blockade with prior tumor from one metastatic melanoma patient detected increased T cell receptor beta sharing between tumour and mutant compared to tumour and wild-type or tumour and uncultured: 11.0% (72/656), 1.5% (206/13 639) and 1.3% (381/29 807), respectively (Monte Carlo P = 10 for mutant versus wild-type and mutant versus uncultured). These data demonstrate that mutant in metastatic melanoma patients are enriched for melanoma-associated T cells and are candidate probes to study in vivo melanoma-reactive T cells.

Indexed as

AdultAgedAged, 80 and overHumansMelanomaMiddle AgedT-Lymphocytes

Identifiers

PMID31135600
PMCPMC6874720
OpenAlexW2945541369

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.