Evidence map›Paper›PMID 31134660›Full record

ArticleProteins2019

Oxidation-induced destabilization of the fibrinogen αC-domain dimer investigated by molecular dynamics simulations.

Eric N Pederson, Gianluca Interlandi

Open access · greenAbstract read
In one paragraph

Article in Proteins, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Eric N PedersonDepartment of Bioengineering, University of Washington, Seattle, Washington.ORCID 0000-0003-0230-406X
Gianluca InterlandiDepartment of Bioengineering, University of Washington, Seattle, Washington.
University of Washington · US

Funding

Dynamic Properties of Bacterial AdhesionsR01AI050940 · NIAID · UNIVERSITY OF WASHINGTON · PI SOKURENKO, EVGENI VENIAMINOVIC · 2002 to 2011
$4.7M
Structural analysis of oxidation effects on the hemostatic processK25HL118137 · NHLBI · UNIVERSITY OF WASHINGTON · PI INTERLANDI, GIANLUCA · 2013 to 2017
$695k
NHLBI NIH HHS K25 HL118137NHLBI NIH HHS K25HL118137NIAID NIH HHS R01 AI050940NIAID NIH HHS RO1AI50940
6 · The paper itself

Abstract

Upon activation, fibrinogen is converted to insoluble fibrin, which assembles into long strings called protofibrils. These aggregate laterally to form a fibrin matrix that stabilizes a blood clot. Lateral aggregation of protofibrils is mediated by the αC domain, a partially structured fragment located in a disordered region of fibrinogen. Polymerization of αC domains links multiple fibrin molecules with each other enabling the formation of thick fibrin fibers and a fibrin matrix that is stable but can also be digested by enzymes. However, oxidizing agents produced during the inflammatory response have been shown to cause thinner fibrin fibers resulting in denser clots, which are harder to proteolyze and pose the risk of deep vein thrombosis and lung embolism. Oxidation of Met

Indexed as

Molecular Dynamics SimulationProtein MultimerizationAnimalsCattleFibrinogenHumansMethionineModels, MolecularOxidation-ReductionPeptide FragmentsPolymersProtein ConformationProtein DomainsProtein Structure, TertiaryThrombosisFibrinogenfibrinogen alphaCMethioninePeptide FragmentsPolymersblood coagulationfree energy landscapeshemostasis and thrombosisimplicit solvationinflammationmethionine oxidationreplica exchange molecular dynamics

Identifiers

PMID31134660
PMCPMC6718331
OpenAlexW2948000923

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.