ArticleGenes & genomics2019
In silico mining and FISH mapping of a chromosome-specific satellite DNA in Capsicum annuum L.
Article in Genes & genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
What it found
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Who cites it
8 citing papers in PubMed.
- A multidisciplinary and integrative review of the structural genome and epigenome of Capsicum L. species.Planta · 2025Review
- Cytogenomic evaluation of regenerated Aralia elata using PLOP-FISH and flow cytometry.Scientific reports · 2024Article
- Genome-wide in silico characterization, validation, and cross-species transferability of microsatellite markers in Mallard and Muscovy ducks.Journal, genetic engineering & biotechnology · 2023Article
- The nature and organization of satellite DNAs inFrontiers in plant science · 2023Article
- Integration of Repeatomic and Cytogenetic Data on Satellite DNA for the Genome Analysis in the GenusPlants (Basel, Switzerland) · 2022Article
- Interstitial Telomeric-like Repeats (ITR) in Seed Plants as Assessed by Molecular Cytogenetic Techniques: A Review.Plants (Basel, Switzerland) · 2021Review
- Tissue and/or developmental stage specific methylation of nrDNA in Capsicum annuum.Journal of plant research · 2021Article
- Repetitive DNA landscape in essential A and supernumerary B chromosomes of Festuca pratensis Huds.Scientific reports · 2019Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundA large proportion of eukaryote nuclear genomes is composed of repetitive DNA. Tracing the dynamics of repetitive elements in the genomes of related taxa can reveal important information about their phylogenic relationships as well as traits that have become distinct to a lineage.
objectiveStudy the genomic abundance and chromosomal location of repetitive DNA in Capsicum annuum L. to understand the repeat dynamics.
methodWe quantified repeated DNA content in the C. annuum genome using the RepeatExplorer pipeline.
resultsAbout 42% of the C. annuum genome dataset comprised repetitive elements. Of these, 0.011, 0.98, 3.09, and 0.024% represented high and low confidence satellite repeats, putative long-terminal repeats (LTRs), and rDNA sequences, respectively. One novel high confidence 167-bp satellite repeat with a genomic proportion of 0.011%, Ca167TR, was identified. Furthermore, FISH with Ca167TR on metaphase chromosomes of C. annuum revealed signals in the subtelomeric regions of the short and long arms of chromosome 3 and 4, respectively.
conclusionFurther understanding of the origin and associated functions of Ca167TR and other repeats in Capsicum will give us insights into the genomic relationships and functions of the genome.
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