Evidence map›Paper›PMID 31134414›Full record

ArticleJournal of industrial microbiology & biotechnology2019

Isolation of a novel platform bacterium for lignin valorization and its application in glucose-free cis,cis-muconate production.

Eri Shinoda, Kenji Takahashi, Nanase Abe, Naofumi Kamimura, Tomonori Sonoki, Eiji Masai

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of industrial microbiology & biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. EngineeringApplied and environmental microbiology · 2024
    Article
  4. Article
  5. The Catabolic System of Acetovanillone and Acetosyringone inApplied and environmental microbiology · 2022
    Article
  6. The SyringateApplied and environmental microbiology · 2020
    Article
  7. Review
  8. Vanillin Production inApplied and environmental microbiology · 2020
    Article
  9. AcidicFrontiers in bioengineering and biotechnology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Eri ShinodaDepartment of Bioengineering, Nagaoka University of Technology, Kamitomioka, Nagaoka, Niigata, 940-2188, Japan.
Kenji TakahashiDepartment of Bioengineering, Nagaoka University of Technology, Kamitomioka, Nagaoka, Niigata, 940-2188, Japan.
Nanase AbeDepartment of Bioengineering, Nagaoka University of Technology, Kamitomioka, Nagaoka, Niigata, 940-2188, Japan.
Naofumi KamimuraDepartment of Bioengineering, Nagaoka University of Technology, Kamitomioka, Nagaoka, Niigata, 940-2188, Japan.
Tomonori SonokiFaculty of Agriculture and Life Science, Hirosaki University, Hirosaki, Aomori, 036-8561, Japan.
Eiji MasaiDepartment of Bioengineering, Nagaoka University of Technology, Kamitomioka, Nagaoka, Niigata, 940-2188, Japan. emasai@vos.nagaokaut.ac.jp.ORCID http://orcid.org/0000-0001-9194-7483
Nagaoka University of Technology · JPHirosaki University · JP

Funding

Advanced Low Carbon Technology Research and Development Program JPMJAL1506
6 · The paper itself

Abstract

Microbial production of cis,cis-muconate (ccMA) from phenolic compounds obtained by chemical depolymerization of lignin is a promising approach to valorize lignin. Because microbial production requires a large amount of carbon and energy source, it is desirable to establish a ccMA-producing strain that utilizes lignin-derived phenols instead of general sources like glucose. We isolated Pseudomonas sp. strain NGC7 that grows well on various phenolic compounds derived from p-hydroxyphenyl, guaiacyl, and syringyl units of lignin. An NGC7 mutant of protocatechuate (PCA) 3,4-dioxygenase and ccMA cycloisomerase genes (NGC703) lost the ability to grow on vanillate and p-hydroxybenzoate but grew normally on syringate. Introduction of a plasmid carrying genes encoding PCA decarboxylase, flavin prenyltransferase, vanillate O-demethylase, and catechol 1,2-dioxygenase into NGC703 enabled production of 3.2 g/L ccMA from vanillate with a yield of 75% while growing on syringate. This strain also produced ccMA from birch lignin-derived phenols. All these results indicate the utility of NGC7 in glucose-free ccMA production.

Indexed as

CatecholsGlucoseIntramolecular LyasesLigninOxidoreductases, O-DemethylatingPlasmidsPseudomonasSorbic AcidcatecholCatecholsGlucoseIntramolecular LyasesLigninmuconate cycloisomerasemuconic acidOxidoreductases, O-DemethylatingSorbic Acidvanillate O-demethylasecis,cis-MuconateLignin valorizationPseudomonas

Identifiers

PMID31134414
OpenAlexW2947288244

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.