Evidence map›Paper›PMID 31133708›Full record

ArticleScientific data2019

Kalium 2.0, a comprehensive database of polypeptide ligands of potassium channels.

Valentin M Tabakmakher, Nikolay A Krylov, Alexey I Kuzmenkov, Roman G Efremov, Alexander A Vassilevski

Open access · goldAbstract readDataset
In one paragraph

Article in Scientific data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Of Seven New KToxins · 2023
    Article
  6. Article
  7. A scorpion toxin takes the sting out of T cell activation.The Journal of general physiology · 2022
    Article
  8. Article
  9. Article
  10. Apamin structure and pharmacology revisited.Frontiers in pharmacology · 2022
    Article
  11. Peptide Toxins Targeting KV Channels.Handbook of experimental pharmacology · 2021
    Review
  12. Review
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Valentin M TabakmakherShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, 117997, Russia.ORCID http://orcid.org/0000-0002-6588-1561
Nikolay A KrylovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, 117997, Russia.
Alexey I KuzmenkovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, 117997, Russia.
Roman G EfremovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, 117997, Russia.
Alexander A VassilevskiShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, 117997, Russia. avas@ibch.ru.ORCID http://orcid.org/0000-0002-1359-0076
National Research University Higher School of Economics · RUFar Eastern Federal University · RUInstitute of Bioorganic Chemistry · RUMoscow Institute of Physics and Technology · RU

Funding

National Research University Higher School of Economics (Higher School of Economics) 5-100Russian Academy of Sciences (RAS) 0101-2015-0039Russian Science Foundation (RSF) 17-74-10172
6 · The paper itself

Abstract

Potassium channels are the most diverse group of ion channels in humans. They take vital parts in numerous physiological processes and their malfunction gives rise to a range of pathologies. In addition to small molecules, there is a wide selection of several hundred polypeptide ligands binding to potassium channels, the majority of which have been isolated from animal venoms. Until recently, only scorpion toxins received focused attention being systematically assembled in the manually curated Kalium database, but there is a diversity of well-characterized potassium channel ligands originating from other sources. To address this issue, here we present the updated and improved Kalium 2.0 that covers virtually all known polypeptide ligands of potassium channels and reviews all available pharmacological data. In addition to an expansion, we have introduced several new features to the database including posttranslational modification annotation, indication of ligand mode of action, BLAST search, and possibility of data export.

Indexed as

Databases, ProteinAnimalsLigandsPeptidesPotassium ChannelsVenomsLigandsPeptidesPotassium ChannelsVenoms

Identifiers

PMID31133708
PMCPMC6536513
OpenAlexW2946711765

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.