Evidence map›Paper›PMID 31131889›Full record

ArticleJournal of periodontal research2019

Transcriptome analysis of gingival tissues of enamel-renal syndrome.

Yi-Ping Wang, Hung-Ying Lin, Wen-Lan Zhong, James P Simmer, Shih-Kai Wang

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in Journal of periodontal research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Journal of dental research · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Abnormal teeth and renal calcifications: Answers.Pediatric nephrology (Berlin, Germany) · 2023
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Yi-Ping WangDepartment of Dentistry, School of Dentistry, National Taiwan University, Taipei City, Taiwan.
Hung-Ying LinDepartment of Oral and Maxillofacial Surgery, National Taiwan University Hospital, Taipei City, Taiwan.
Wen-Lan ZhongDepartment of Dentistry, School of Dentistry, National Taiwan University, Taipei City, Taiwan.
James P SimmerDepartment of Biologic and Materials Sciences, University of Michigan School of Dentistry, Ann Arbor, Michigan.
Shih-Kai WangDepartment of Dentistry, School of Dentistry, National Taiwan University, Taipei City, Taiwan.ORCID https://orcid.org/0000-0002-8378-5880
National Taiwan University · TWNational Taiwan University Hospital · TWUniversity of Michigan · US

Funding

Proteomics and Genetics of Enamel and DentinR01DE015846 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HU, JAN CHING CHUN · 2004 to 2019
$5.7M
DSPP Function, Pathophysiology, and Genetic DiagnosisR01DE027675 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SIMMER, JAMES P · 2018 to 2022
$2.4M
Genetic Mechanisms of Amelogenesis ImperfectaR56DE015846 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HU, JAN CHING CHUN · 2021 to 2021
$402k
Ministry of Science and Technology, Taiwan Grant 107-2314-B-002-014National Taiwan University Hospital Grant 106-N3424NIDCR NIH HHS DE015846NIDCR NIH HHS DE027675NIDCR NIH HHS R01 DE015846NIDCR NIH HHS R01 DE027675NIDCR NIH HHS R56 DE015846
6 · The paper itself

Abstract

BACKGROUND AND

objectiveBiallelic loss-of-function mutations of human FAM20A have been known to cause enamel-renal syndrome (ERS), featured by agenesis of dental enamel, nephrocalcinosis, and other orodental abnormalities, including gingival hyperplasia. However, while the histopathology of this gingival anomaly has been analyzed, its underlying molecular mechanism remains largely unknown. This study aimed to unravel the pathogenesis of gingival hyperplasia in ERS.

methodsWhole-exome sequencing was conducted for an ERS case. Transcriptome analyses, using RNA sequencing, of the patient's gingiva were performed to unravel dysregulated molecules and aberrant biological processes underlying the gingival pathology of ERS, which was further confirmed by histology and immunohistochemistry.

resultsTwo novel frameshift FAM20A mutations in Exon 1 (g.5417delG; c.129delG; p.Cys44Alafs*101) and Exon 5 (g.62248_62249delAG; c.734_735delAG; p.Glu245Glyfs*11) were identified. Transcriptional profiling of patient's gingival tissue revealed a total of 1683 genes whose expression had increased (1129 genes) or decreased (554 genes) at least 2-fold compared to control gingival tissues. There were 951 gene ontology (GO) terms of biological process being significantly over-represented or under-represented. While GOs involved in extracellular matrix organization, angiogenesis, biomineralization, and epithelial cell proliferation appeared to be activated in ERS gingiva, genes related to keratinocyte differentiation, epithelial development, and keratinization were of decreased expression. FAM20A immunohistochemistry revealed a strong reactivity at the suprabasal layers of epithelium in control gingiva but showed a significantly diminished and scattered signal in ERS tissues. For genes showing significant over-expression in the transcriptome analyses, namely ALPL, SPARC, and ACTA2, an increased immunoreactivity was observed.

conclusionOur results unraveled a potential role for FAM20A in homeostasis of both gingival epithelium and connective tissues.

Indexed as

TranscriptomeAdultAmelogenesis ImperfectaDental Enamel ProteinsFrameshift MutationGene Expression ProfilingGingivaHumansMaleNephrocalcinosisDental Enamel ProteinsFAM20A protein, humanenamelgingival hyperplasiaRNA sequencingtranscriptome

Identifiers

PMID31131889
PMCPMC6848751
OpenAlexW2947586356

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.