Evidence map›Paper›PMID 31131427›Full record

ArticleArchives of virology2019

Global distribution of white spot syndrome virus genotypes determined using a novel genotyping assay.

J Oakey, C Smith, D Underwood, M Afsharnasab, V Alday-Sanz, A Dhar, S Sivakumar, A S Sahul Hameed, K Beattie, A Crook

Open access · hybridAbstract read
In one paragraph

Article in Archives of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 41 citations in OpenAlex.

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  15. Hemocyte-Mediated Phagocytosis in Crustaceans.Frontiers in immunology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

J OakeyBiosecurity Sciences Laboratory, Biosecurity Queensland, Queensland Department of Agriculture and Fisheries, 39 Kessels Road, Coopers Plains, QLD, 4108, Australia. jane.oakey@daf.qld.gov.au.ORCID http://orcid.org/0000-0003-2638-1879
C SmithBiosecurity Sciences Laboratory, Biosecurity Queensland, Queensland Department of Agriculture and Fisheries, 39 Kessels Road, Coopers Plains, QLD, 4108, Australia.
D UnderwoodBiosecurity Sciences Laboratory, Biosecurity Queensland, Queensland Department of Agriculture and Fisheries, 39 Kessels Road, Coopers Plains, QLD, 4108, Australia.
M AfsharnasabDepartment of Aquatic Animal Health and Diseases, Iranian Fisheries Research Organization, Tehran, Iran.
V Alday-SanzNational Aquaculture Group, King Abdul Aziz Rd, Al Murjan, Jeddah, 23715, Kingdom of Saudi Arabia.
A DharSchool of Animal and Comparative Biomedical Sciences, The University of Arizona, 1041 E Lowell St, Tucson, AZ, 85721, USA.
S SivakumarAquatic Animal Health Laboratory, C. Abdul Hakeem College, Melvisharam, Vellore District, Tamil Nadu, India.
A S Sahul HameedAquatic Animal Health Laboratory, C. Abdul Hakeem College, Melvisharam, Vellore District, Tamil Nadu, India.
K BeattieBiosecurity Queensland, Queensland Department of Agriculture and Fisheries, 41 George Street, Brisbane, 4000, Australia.
A CrookBiosecurity Queensland, Queensland Department of Agriculture and Fisheries, 41 George Street, Brisbane, 4000, Australia.
Department of Primary Industries · AUUniversity of Arizona · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

White spot disease, caused by infection with white spot syndrome virus (WSSV), is a serious panzootic affecting prawn aquaculture. The disease has spread rapidly around the prawn-culturing regions of the world through a number of previously identified mechanisms. The ability to distinguish and trace strains of WSSV is of great benefit to identify, and then limit, the translocation routes of the disease. Here, we describe a novel genotyping method using 34 short tandem repeat regions of the viral genome concurrently. This technique is highly sensitive to strain differences when compared to previous methods. The efficacy of the described method is demonstrated by testing WSSV isolates from around the globe, showing regional genotypic differences. The differences in the genotypes were used to create a global minimum spanning network, and in most cases the observed relationships were substantiated with verification of transboundary movement. This novel panel of STR markers will provide a valuable epidemiological tool for white spot disease. We have applied this to an outbreak of the disease in Queensland, Australia, that occurred in 2016. While the results indicate that the source of this outbreak currently remains cryptic, the analyses have provided valuable insights with which to further study the origins of the strains involved.

Indexed as

AnimalsAquacultureAustraliaDisease OutbreaksGenome, ViralGenotypeGenotyping TechniquesMicrosatellite RepeatsPenaeidaeWhite spot syndrome virus 1

Identifiers

PMID31131427
PMCPMC6591196
OpenAlexW2947265860

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.