Evidence map›Paper›PMID 31131000›Full record

ArticleThe journal of venomous animals and toxins including tropical diseases2019

Subproteome of

Gisele A Wiezel, Karla Cf Bordon, Ronivaldo R Silva, Mário Sr Gomes, Hamilton Cabral, Veridiana M Rodrigues, Beatrix Ueberheide, Eliane C Arantes

Open access · goldAbstract read
In one paragraph

Article in The journal of venomous animals and toxins including tropical diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. The Protective Action ofBioMed research international · 2024
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Gisele A WiezelDepartment of Physics and Chemistry, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Av. do Café s/n, 14040-903, Ribeirão Preto, SP, Brazil.
Karla Cf BordonDepartment of Physics and Chemistry, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Av. do Café s/n, 14040-903, Ribeirão Preto, SP, Brazil.
Ronivaldo R SilvaInstitute of Biosciences, Letters and Exact Sciences, Universidade Estadual Paulista, Rua Cristóvão Colombo, 2265, 15054-000, São José do Rio Preto, SP, Brazil.
Mário Sr GomesInstitute of Genetics and Biochemistry, Federal University of Uberlândia, Av. Pará, 1720, 38400-902, Uberlândia, MG, Brazil.
Hamilton CabralDepartment of Pharmaceutical Sciences, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Av. do Café s/n, 14040-903, Ribeirão Preto, SP, Brazil.
Veridiana M RodriguesInstitute of Genetics and Biochemistry, Federal University of Uberlândia, Av. Pará, 1720, 38400-902, Uberlândia, MG, Brazil.
Beatrix UeberheideProteomics Resource Center, New York University Langone Medical Center, 430 East 29th St., 10016, New York City, USA.
Eliane C ArantesDepartment of Physics and Chemistry, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Av. do Café s/n, 14040-903, Ribeirão Preto, SP, Brazil.ORCID 0000-0002-6712-6033
Universidade de Ribeirão Preto · BRNYU Langone Health · USUniversidade Estadual Paulista (Unesp) · BRUniversidade Federal da Bahia · BRUniversidade Federal de Uberlândia · BR

Funding

Protein Sequencing Tools for Biological TherapeuticsR41GM103362 · NIGMS · PROTEIN METRICS, LLC · PI FENYO, DAVID · 2012 to 2014
$686k
NIGMS NIH HHS R41 GM103362
6 · The paper itself

Abstract

background

methodsLmrV was fractionated through molecular exclusion chromatography and the main fraction (S5) was submitted to fibrinogenolytic activity assay and fractionated by reversed-phase chromatography. The N-terminal sequences of the subfractions eluted from reversed-phase chromatography were determined by automated Edman degradation. Enzyme activity of LmrSP-4 was evaluated upon chromogenic substrates for thrombin (S-2238), plasma kallikrein (S-2302), plasmin and streptokinase-activated plasminogen (S-2251) and Factor Xa (S-2222) and upon fibrinogen. All assays were carried out in the presence or absence of possible inhibitors. The fluorescence resonance energy transfer substrate Abz-KLRSSKQ-EDDnp was used to determine the optimal conditions for LmrSP-4 activity. Molecular mass of LmrSP-4 was determined by MALDI-TOF and digested peptides after trypsin and Glu-C treatments were analyzed by high resolution MS/MS using different fragmentation modes.

resultsFraction S5 showed strong proteolytic activity upon fibrinogen. Its fractionation by reversed-phase chromatography gave rise to 6 main fractions (S5C1-S5C6). S5C1-S5C5 fractions correspond to serine proteinases whereas S5C6 represents a C-type lectin. S5C4 (named LmrSP-4) had its N-terminal determined by Edman degradation up to the 53

conclusionsNovel serine proteinase isoforms and a lectin were identified in LmrV. Additionally, a kallikrein-like serine proteinase that might be useful as molecular tool for investigating bradykinin-involving process was isolated and partially characterized.

Indexed as

bushmasterenvenomationkallikrein-likekininogenaselectinplasminogen activatorproteasesnake venomSVSP

Identifiers

PMID31131000
PMCPMC6521711
OpenAlexW2935781882

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.