Evidence map›Paper›PMID 31128961›Full record

ArticleImmunity2019

Polychromic Reporter Mice Reveal Unappreciated Innate Lymphoid Cell Progenitor Heterogeneity and Elusive ILC3 Progenitors in Bone Marrow.

Jennifer A Walker, Paula A Clark, Alastair Crisp, Jillian L Barlow, Aydan Szeto, Ana C F Ferreira, Batika M J Rana, Helen E Jolin, Noe Rodriguez-Rodriguez, Meera Sivasubramaniam and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Immunity, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 122 citations in OpenAlex.

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20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Jennifer A WalkerMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.
Paula A ClarkMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.
Alastair CrispMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.
Jillian L BarlowMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.
Aydan SzetoMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.
Ana C F FerreiraMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.
Batika M J RanaMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.
Helen E JolinMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.
Noe Rodriguez-RodriguezMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.
Meera SivasubramaniamMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.
Richard PannellMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.
James CruickshankMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.
Maria DalyMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.
Liora Haim-VilmovskyWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SA UK.
Sarah A TeichmannWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SA UK; Theory of Condensed Matter, Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge, UK; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, UK.
Andrew N J McKenzieMRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom. Electronic address: anm@mrc-lmb.cam.ac.uk.
MRC Laboratory of Molecular Biology · GBWellcome Sanger Institute · GB

Funding

Medical Research Council MC_EX_MR/S300001/1Medical Research Council MC_U105178805Medical Research Council U105178805Wellcome TrustWellcome Trust 100963/Z/13/Z
6 · The paper itself

Abstract

Innate lymphoid cells (ILCs) play strategic roles in tissue homeostasis and immunity. ILCs arise from lymphoid progenitors undergoing lineage restriction and the development of specialized ILC subsets. We generated "5x polychromILC" transcription factor reporter mice to delineate ILC precursor states by revealing the multifaceted expression of key ILC-associated transcription factors (Id2, Bcl11b, Gata3, RORγt, and RORα) during ILC development in the bone marrow. This approach allowed previously unattained enrichment of rare progenitor subsets and revealed hitherto unappreciated ILC precursor heterogeneity. In vivo and in vitro assays identified precursors with potential to generate all ILC subsets and natural killer (NK) cells, and also permitted discrimination of elusive ILC3 bone marrow antecedents. Single-cell gene expression analysis identified a discrete ILC2-committed population and delineated transition states between early progenitors and a highly heterogeneous ILC1, ILC3, and NK precursor cell cluster. This diversity might facilitate greater lineage potential upon progenitor recruitment to peripheral tissues.

Indexed as

AnimalsBone MarrowCell DifferentiationCell LineCell LineageGene Expression Regulation, DevelopmentalGenes, ReporterImmunity, InnateKiller Cells, NaturalLymphocytesLymphocyte SubsetsLymphoid Progenitor CellsMiceMice, Inbred C57BLMice, KnockoutMice, TransgenicTranscription Factorsbone marrowILC3 progenitorILC developmentILC progenitors

Identifiers

PMID31128961
PMCPMC6642165
OpenAlexW2946500233

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.