Evidence map›Paper›PMID 31127580›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2019

Assembling the Human Resectosome on DNA Curtains.

Michael M Soniat, Logan R Myler, Ilya J Finkelstein

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Michael M SoniatDepartment of Molecular Biosciences and Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX, USA.
Logan R MylerDepartment of Molecular Biosciences and Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX, USA.
Ilya J FinkelsteinDepartment of Molecular Biosciences and Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX, USA. ifinkelstein@cm.utexas.edu.

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI WALTER J. CHAZIN · 2001 to 2026
$89.6M
Mechanistic Characterization of the First Steps of Human DNA Break RepairR01GM120554 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI FINKELSTEIN, ILYA J · 2016 to 2020
$1.5M
Single-Molecule Studies of Human DNA Double Strand Break RepairK00CA212452 · NCI · ROCKEFELLER UNIVERSITY · PI MYLER, LOGAN ROSS · 2018 to 2021
$376k
Single-Molecule Studies of Human DNA Double Strand Break RepairF99CA212452 · NCI · UNIVERSITY OF TEXAS AT AUSTIN · PI MYLER, LOGAN ROSS · 2016 to 2017
$69k
NCI NIH HHS F99 CA212452NCI NIH HHS K00 CA212452NCI NIH HHS P01 CA092584NIGMS NIH HHS R01 GM120554
6 · The paper itself

Abstract

DNA double-strand breaks (DSBs) are a potentially lethal DNA lesions that disrupt both the physical and genetic continuity of the DNA duplex. Homologous recombination (HR) is a universally conserved genome maintenance pathway that initiates via nucleolytic processing of the broken DNA ends (resection). Eukaryotic DNA resection is catalyzed by the resectosome-a multicomponent molecular machine consisting of the nucleases DNA2 or Exonuclease 1 (EXO1), Bloom's helicase (BLM), the MRE11-RAD50-NBS1 (MRN) complex, and additional regulatory factors. Here, we describe methods for purification and single-molecule imaging and analysis of EXO1, DNA2, and BLM. We also describe how to adapt resection assays to the high-throughput single-molecule DNA curtain assay. By organizing hundreds of individual molecules on the surface of a microfluidic flowcell, DNA curtains visualize protein complexes with the required spatial and temporal resolution to resolve the molecular choreography during critical DNA-processing reactions.

Indexed as

Recombinational DNA RepairDNA Breaks, Double-StrandedDNA HelicasesDNA Repair EnzymesExodeoxyribonucleasesMicrofluidic Analytical TechniquesMicroscopy, FluorescenceQuantum DotsRecombinant ProteinsRecQ HelicasesSingle Molecule ImagingBloom syndrome proteinDNA2 protein, humanDNA HelicasesDNA Repair EnzymesEXO1 protein, humanExodeoxyribonucleasesRecombinant ProteinsRecQ HelicasesBloom’s syndrome helicase (BLM)DNA curtainsDNA nuclease (DNA2)Exonuclease 1 (EXO1)Homologous recombination

Identifiers

PMID31127580
PMCPMC6666396

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.