Evidence map›Paper›PMID 31127394›Full record

ArticleAMB Express2019

Isolation and identification of a TetR family protein that regulates the biodesulfurization operon.

Pooja Murarka, Tanaya Bagga, Pooja Singh, Sabita Rangra, Preeti Srivastava

Open access · goldAbstract read
In one paragraph

Article in AMB Express, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Pooja MurarkaDepartment of Biochemical Engineering & Biotechnology, Indian Institute of Technology Delhi, New Delhi, India.
Tanaya BaggaDepartment of Biochemical Engineering & Biotechnology, Indian Institute of Technology Delhi, New Delhi, India.
Pooja SinghDepartment of Biochemical Engineering & Biotechnology, Indian Institute of Technology Delhi, New Delhi, India.
Sabita RangraDepartment of Biochemical Engineering & Biotechnology, Indian Institute of Technology Delhi, New Delhi, India.
Preeti SrivastavaDepartment of Biochemical Engineering & Biotechnology, Indian Institute of Technology Delhi, New Delhi, India. preeti@dbeb.iitd.ac.in.ORCID http://orcid.org/0000-0003-2645-5495
Indian Institute of Technology Delhi · IN

Funding

Department of Biotechnology , Ministry of Science and Technology DBT IYBA grant
6 · The paper itself

Abstract

Biodesulfurization helps in removal of sulfur from organosulfur present in petroleum fractions. All microorganisms isolated to date harbor a desulfurization operon consisting of three genes dszA, -B and -C which encode for monooxygenases (DszA & C) and desulfinase (DszB). Most of the studies have been carried out using dibenzothiophene as the model organosulfur compound, which is converted into 2 hydroxybiphenyl by a 4S pathway which maintains the calorific value of fuel. There are few studies reported on the regulation of this operon. However, there are no reports on the proteins which can enhance the activity of the operon. In the present study, we used in vitro and in vivo methods to identify a novel TetR family transcriptional regulator from Gordonia sp. IITR100 which functions as an activator of the dsz operon. Activation by TetR family regulator resulted in enhanced levels of desulfurization enzymes in Gordonia sp. IITR100. Activation was observed only when the 385 bp full length promoter was used. Upstream sequences between - 385 and - 315 were found to be responsible for activation. We provide evidence that the TetR family transcription regulator serves as an activator in other biodesulfurizing microorganisms such as Rhodococcus erythropolis IGTS8 and heterologous host Escherichia coli. This is the first report on the isolation of a possible transcriptional regulator that activates the desulfurization operon resulting in improved biodesulfurization.

Indexed as

ActivatorBiodesulfurizationE. coliGordonia sp. IITR100Rhodococcus erythropolisTetR

Identifiers

PMID31127394
PMCPMC6534649
OpenAlexW2947746777

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.