Evidence map›Paper›PMID 31126976›Full record

ArticleGenetics2019

Quantifying Microsatellite Mutation Rates from Intestinal Stem Cell Dynamics in Msh2-Deficient Murine Epithelium.

Joseph Christopher, Ann-Sofie Thorsen, Sam Abujudeh, Filipe C Lourenço, Richard Kemp, Paul K Potter, Edward Morrissey, Lee Hazelwood, Douglas J Winton

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Hotspots of Human Mutation.Trends in genetics : TIG · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Joseph ChristopherLi Ka Shing Centre, Cancer Research UK Cambridge Institute, University of Cambridge, CB2 0RE, United Kingdom.ORCID 0000-0002-2059-0154
Ann-Sofie ThorsenLi Ka Shing Centre, Cancer Research UK Cambridge Institute, University of Cambridge, CB2 0RE, United Kingdom.
Sam AbujudehLi Ka Shing Centre, Cancer Research UK Cambridge Institute, University of Cambridge, CB2 0RE, United Kingdom.
Filipe C LourençoLi Ka Shing Centre, Cancer Research UK Cambridge Institute, University of Cambridge, CB2 0RE, United Kingdom.
Richard KempLi Ka Shing Centre, Cancer Research UK Cambridge Institute, University of Cambridge, CB2 0RE, United Kingdom.
Paul K PotterDepartment Biological and Medical Sciences, Faculty of Health and Life Sciences, Oxford Brookes University, OX3 0BP, United Kingdom.
Edward MorrisseyMRC Weatherall Institute of Molecular Medicine, University of Oxford, OX3 9DS, United Kingdom.
Lee HazelwoodLi Ka Shing Centre, Cancer Research UK Cambridge Institute, University of Cambridge, CB2 0RE, United Kingdom.
Douglas J WintonLi Ka Shing Centre, Cancer Research UK Cambridge Institute, University of Cambridge, CB2 0RE, United Kingdom doug.winton@cruk.cam.ac.uk.ORCID 0000-0001-6067-7927
University of Cambridge · GBCancer Research UK · GBOxford Brookes University · GBUniversity of Oxford · GB

Funding

Cancer Research UK 24456Medical Research Council MC_UU_12025Wellcome TrustWellcome Trust 103805
6 · The paper itself

Abstract

Microsatellite sequences have an enhanced susceptibility to mutation, and can act as sentinels indicating elevated mutation rates and increased risk of cancer. The probability of mutant fixation within the intestinal epithelium is dictated by a combination of stem cell dynamics and mutation rate. Here, we exploit this relationship to infer microsatellite mutation rates. First a sensitive, multiplexed, and quantitative method for detecting somatic changes in microsatellite length was developed that allowed the parallel detection of mutant [CA]

Indexed as

Microsatellite RepeatsMutation RateAdult Stem CellsAnimalsFemaleIntestinal MucosaMaleMiceMice, Inbred C57BLMitosisMutS Homolog 2 ProteinMsh2 protein, mouseMutS Homolog 2 ProteinintestinemicrosatellitemouseMsh2mutation

Identifiers

PMID31126976
PMCPMC6614890
OpenAlexW2946150027

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.