Evidence map›Paper›PMID 31126958›Full record

ArticleThe EMBO journal2019

Nutrient-sensitive transcription factors TFEB and TFE3 couple autophagy and metabolism to the peripheral clock.

Nunzia Pastore, Anna Vainshtein, Niculin J Herz, Tuong Huynh, Lorenzo Brunetti, Tiemo J Klisch, Margherita Mutarelli, Patrizia Annunziata, Kenichiro Kinouchi, Nicola Brunetti-Pierri and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
12.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 78 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Exploring Dapagliflozin's Influence on Autophagic Flux in Mania-like Behaviour: Insights from the LKB1/AMPK/LC3 Pathway in a Mouse Model.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2025
    Article
  6. Review
  7. Review
  8. TET activity safeguards pluripotency throughout embryonic dormancy.Nature structural & molecular biology · 2024
    Article
  9. Review
  10. Article
  11. Review
  12. The engagement of autophagy in maniac disease.CNS neuroscience & therapeutics · 2023
    Review
  13. Article
  14. Article
  15. Circadian clock protein BMAL1 broadly influences autophagy and endolysosomal function in astrocytes.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Article
  17. Review
  18. Frontiers in immunology · 2023
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Nunzia PastoreJan and Dan Duncan Neurological Research Institute, Texas Children Hospital, Houston, TX, USA nunzia.pastore@bcm.edu ballabio@tigem.it.ORCID 0000-0002-8701-5592
Anna VainshteinJan and Dan Duncan Neurological Research Institute, Texas Children Hospital, Houston, TX, USA.
Niculin J HerzJan and Dan Duncan Neurological Research Institute, Texas Children Hospital, Houston, TX, USA.
Tuong HuynhJan and Dan Duncan Neurological Research Institute, Texas Children Hospital, Houston, TX, USA.ORCID 0000-0002-5595-419X
Lorenzo BrunettiStem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.
Tiemo J KlischJan and Dan Duncan Neurological Research Institute, Texas Children Hospital, Houston, TX, USA.ORCID 0000-0001-8182-384X
Margherita MutarelliTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy.
Patrizia AnnunziataTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy.
Kenichiro KinouchiDepartment of Biological Chemistry, Center for Epigenetics and Metabolism, U1233 INSERM, School of Medicine, University of California Irvine (UCI), Irvine, CA, USA.
Nicola Brunetti-PierriTelethon Institute of Genetics and Medicine (TIGEM), Pozzuoli, Italy.ORCID 0000-0002-6895-8819
Paolo Sassone-CorsiDepartment of Biological Chemistry, Center for Epigenetics and Metabolism, U1233 INSERM, School of Medicine, University of California Irvine (UCI), Irvine, CA, USA.ORCID 0000-0001-7091-3954
Andrea BallabioJan and Dan Duncan Neurological Research Institute, Texas Children Hospital, Houston, TX, USA nunzia.pastore@bcm.edu ballabio@tigem.it.ORCID 0000-0003-1381-4604
Baylor College of Medicine · USTelethon Institute Of Genetics And Medicine · ITUniversity of California, Irvine · USFederico II University Hospital · IT

Funding

Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, NEUL, JEFFREY L · 2014 to 2019
$7.8M
MODULATION OF CELLULAR CLEARANCE TO TREAT HUMAN DISEASER01NS078072 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI BALLABIO, ANDREA · 2012 to 2020
$3.1M
NICHD NIH HHS U54 HD083092NINDS NIH HHS R01 NS078072
6 · The paper itself

Abstract

Autophagy and energy metabolism are known to follow a circadian pattern. However, it is unclear whether autophagy and the circadian clock are coordinated by common control mechanisms. Here, we show that the oscillation of autophagy genes is dependent on the nutrient-sensitive activation of TFEB and TFE3, key regulators of autophagy, lysosomal biogenesis, and cell homeostasis. TFEB and TFE3 display a circadian activation over the 24-h cycle and are responsible for the rhythmic induction of genes involved in autophagy during the light phase. Genetic ablation of TFEB and TFE3 in mice results in deregulated autophagy over the diurnal cycle and altered gene expression causing abnormal circadian wheel-running behavior. In addition, TFEB and TFE3 directly regulate the expression of

Indexed as

AutophagyCircadian ClocksEnergy MetabolismAnimalsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBinding SitesCells, CulturedCircadian RhythmGene Expression RegulationHEK293 CellsHumansMaleMiceMice, Inbred C57BLMice, TransgenicNuclear Receptor Subfamily 1, Group D, Member 1Basic Helix-Loop-Helix Leucine Zipper Transcription FactorsNr1d1 protein, mouseNuclear Receptor Subfamily 1, Group D, Member 1NutrientsTcfe3 protein, mouseTcfeb protein, mouseTranscription Factorscircadian rhythmgene oscillationMiT‐TFEREV‐ERBα

Identifiers

PMID31126958
PMCPMC6576167
OpenAlexW2946006429

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.