Evidence map›Paper›PMID 31126914›Full record

ArticleBlood advances2019

The E3 ligase adaptor molecule SPOP regulates fetal hemoglobin levels in adult erythroid cells.

Xianjiang Lan, Eugene Khandros, Peng Huang, Scott A Peslak, Saurabh K Bhardwaj, Jeremy D Grevet, Osheiza Abdulmalik, Hongxin Wang, Cheryl A Keller, Belinda Giardine and 9 more

Open access · goldAbstract read
In one paragraph

Article in Blood advances, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Multi-Omics Analysis in β-Thalassemia Using anInternational journal of molecular sciences · 2022
    Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. SPOP and cancer: a systematic review.American journal of cancer research · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 1 country.

Xianjiang LanDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA.ORCID 0000-0001-8208-2916
Eugene KhandrosDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA.
Peng HuangDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA.
Scott A PeslakDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA.
Saurabh K BhardwajDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA.
Jeremy D GrevetDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA.
Osheiza AbdulmalikDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA.
Hongxin WangDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA.
Cheryl A KellerDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA.ORCID 0000-0001-6594-0245
Belinda GiardineDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA.ORCID 0000-0002-4681-1074
Josue BaezaDepartment of Biochemistry and Biophysics and.ORCID 0000-0003-4960-3905
Emily R DuffnerDepartment of Cancer Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA.
Osama El DemerdashCold Spring Harbor Laboratory, Cold Spring Harbor, NY; and.
Xiaoli S WuCold Spring Harbor Laboratory, Cold Spring Harbor, NY; and.
Christopher R VakocCold Spring Harbor Laboratory, Cold Spring Harbor, NY; and.
Benjamin A GarciaDepartment of Biochemistry and Biophysics and.
Ross C HardisonDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA.ORCID 0000-0003-4084-7516
Junwei ShiDepartment of Cancer Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA.ORCID 0000-0002-8427-6316
Gerd A BlobelDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA.ORCID 0000-0002-0714-9612
Children's Hospital of Philadelphia · USPennsylvania State University · USCold Spring Harbor Laboratory · USUniversity of Pennsylvania · USState University of New York · US

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
Toward a comprehensive functional annotation of the human genomeU54HG006998 · NHGRI · HUDSON-ALPHA INSTITUTE FOR BIOTECHNOLOGY · PI MYERS, RICHARD M · 2012 to 2016
$17.5M
HEMATOLOGY CLINICAL RESEARCH TRAINING PROGRAMT32HL007439 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI LAWRENCE F BRASS, PETER S KLEIN · 1985 to 2026
$17.1M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008216 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI EPSTEIN, DOUGLAS J · 1987 to 2023
$8.3M
Regulation of Hemoglobin SwitchingR01HL119479 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI Gerd A Blobel · 2013 to 2026
$8.0M
VISION: ValIdated Systematic IntegratiON of epigenomic dataR24DK106766 · NIDDK · PENNSYLVANIA STATE UNIVERSITY, THE · PI BLOBEL, GERD A, BODINE, DAVID M. · 2016 to 2020
$6.2M
Viral modulation of epitranscriptomic mechanismsR01AI118891 · NIAID · WASHINGTON UNIVERSITY · PI GARCIA, BENJAMIN A, WEITZMAN, MATTHEW D. · 2015 to 2025
$5.4M
Epigenetic Control of Hematopoietic Gene ExpressionR37DK058044 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI BLOBEL, GERD A · 2010 to 2019
$3.7M
Understanding the Role of Combinatorial Histone PTM PatternsR01GM110174 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2014 to 2017
$1.3M
Orbitrap Elite Mass Spectrometer for Chromatin Biology and Epigenetics ResearchS10OD016270 · OD · UNIVERSITY OF PENNSYLVANIA · PI GARCIA, BENJAMIN A · 2013 to 2013
$600k
Global Predictions and Tests of Hematopoietic RegulationR56DK065806 · NIDDK · PENNSYLVANIA STATE UNIVERSITY, THE · PI BLOBEL, GERD A, BODINE, DAVID M. · 2014 to 2014
$224k
Therapeutic potential and broader applicability of forced chromatin loopingF30DK107055 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI GREVET, JEREMY DANIEL · 2015 to 2016
$78k
NCI NIH HHS P30 CA045508NHGRI NIH HHS U54 HG006998NHLBI NIH HHS R01 HL119479NHLBI NIH HHS T32 HL007439NIAID NIH HHS R01 AI118891NIDDK NIH HHS F30 DK107055NIDDK NIH HHS R24 DK106766NIDDK NIH HHS R37 DK058044NIDDK NIH HHS R56 DK065806NIGMS NIH HHS R01 GM110174NIGMS NIH HHS T32 GM008216NIH HHS S10 OD016270
6 · The paper itself

Abstract

Reactivation of fetal hemoglobin (HbF) production benefits patients with sickle cell disease and β-thalassemia. To identify new HbF regulators that might be amenable to pharmacologic control, we screened a protein domain-focused CRISPR-Cas9 library targeting chromatin regulators, including BTB domain-containing proteins. Speckle-type POZ protein (SPOP), a substrate adaptor of the CUL3 ubiquitin ligase complex, emerged as a novel HbF repressor. Depletion of SPOP or overexpression of a dominant negative version significantly raised fetal globin messenger RNA and protein levels with minimal detrimental effects on normal erythroid maturation, as determined by transcriptome and proteome analyses. SPOP controls HbF expression independently of the major transcriptional HbF repressors BCL11A and LRF. Finally, pharmacologic HbF inducers cooperate with SPOP depletion during HbF upregulation. Our study implicates SPOP and the CUL3 ubiquitin ligase system in controlling HbF production in human erythroid cells and may offer new therapeutic strategies for the treatment of β-hemoglobinopathies.

Indexed as

AdultErythroid CellsFemaleFetal HemoglobinHumansMaleNuclear ProteinsRepressor ProteinsUbiquitin-Protein LigasesYoung AdultFetal HemoglobinNuclear ProteinsRepressor ProteinsSPOP protein, humanUbiquitin-Protein Ligases

Identifiers

PMID31126914
PMCPMC6538866
OpenAlexW2946672260

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.