Evidence map›Paper›PMID 31126903›Full record

ArticleBiology open2019

Beyond the whole-mount phenotype: high-resolution imaging in fluorescence-based applications on zebrafish.

Veronika Oralová, Joana T Rosa, Mieke Soenens, Jan Willem Bek, Andy Willaert, Paul Eckhard Witten, Ann Huysseune

Abstract read
In one paragraph

Article in Biology open, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Standardization of bone morphometry and mineral density assessments in zebrafish and other small laboratory fishes using X-ray radiography and micro-computed tomography.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2024
    Article
  6. Article
  7. Experimental induction of supernumerary teeth in zebrafish: Oral teeth perhaps, dorsal teeth for sure.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Tipping the Scales With Zebrafish to Understand Adaptive Tumor Immunity.Frontiers in cell and developmental biology · 2021
    Review
  13. Review
  14. Multiple epithelia are required to develop teeth deep inside the pharynx.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Veronika OralováEvolutionary Developmental Biology, Biology Department, Ghent University, 9000 Ghent, Belgium.
Joana T RosaEvolutionary Developmental Biology, Biology Department, Ghent University, 9000 Ghent, Belgium.
Mieke SoenensEvolutionary Developmental Biology, Biology Department, Ghent University, 9000 Ghent, Belgium.
Jan Willem BekCenter for Medical Genetics Ghent, Ghent University, 9000 Ghent, Belgium.
Andy WillaertCenter for Medical Genetics Ghent, Ghent University, 9000 Ghent, Belgium.ORCID http://orcid.org/0000-0002-9543-1932
Paul Eckhard WittenEvolutionary Developmental Biology, Biology Department, Ghent University, 9000 Ghent, Belgium.ORCID http://orcid.org/0000-0002-2928-5762
Ann HuysseuneEvolutionary Developmental Biology, Biology Department, Ghent University, 9000 Ghent, Belgium Ann.Huysseune@UGent.be.ORCID http://orcid.org/0000-0001-8713-0462

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Zebrafish is now widely used in biomedical research as a model for human diseases, but the relevance of the model depends on a rigorous analysis of the phenotypes obtained. Many zebrafish disease models, experimental techniques and manipulations take advantage of fluorescent reporter molecules. However, phenotypic analysis often does not go beyond establishing overall distribution patterns of the fluorophore in whole-mount embryos or using vibratome or paraffin sections with poor preservation of tissue architecture and limited resolution. Obtaining high-resolution data of fluorescent signals at the cellular level from internal structures mostly depends on the availability of expensive imaging technology. Here, we propose a new and easily applicable protocol for embedding and sectioning of zebrafish embryos using in-house prepared glycol methacrylate (GMA) plastic that is suited for preservation of fluorescent signals (including photoactivatable fluorophores) without the need for antibodies. Four main approaches are described, all involving imaging fluorescent signals on semithin (3 µm or less) sections. These include sectioning transgenic animals, whole-mount immunostained embryos, cell tracking, as well as on-section enzyme histochemistry.

Indexed as

Cell trackingFluorophoresGFPGMAImmunofluorescenceTRAPZebrafish

Identifiers

PMID31126903
PMCPMC6550072

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.