Evidence map›Paper›PMID 31125568›Full record

ArticleJournal of molecular biology2019

Exploration of the TRIM Fold of MuRF1 Using EPR Reveals a Canonical Antiparallel Structure and Extended COS-Box.

Michael Stevens, Barbara Franke, Katarzyna A Skorupka, David S Cafiso, Owen Pornillos, Olga Mayans, David G Norman

Abstract read
In one paragraph

Article in Journal of molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Targeting MuRF1 to Combat Skeletal Muscle Wasting in Cardiac Cachexia: Mechanisms and Therapeutic Prospects.Medical science monitor : international medical journal of experimental and clinical research · 2024
    Review
  4. Targeting TRIM Proteins: A Quest towards Drugging an Emerging Protein Class.Chembiochem : a European journal of chemical biology · 2021
    Review
  5. Article
  6. MuRF1/TRIM63, Master Regulator of Muscle Mass.International journal of molecular sciences · 2020
    Review
  7. Emerging Strategies Targeting Catabolic Muscle Stress Relief.International journal of molecular sciences · 2020
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Michael StevensNucleic Acids Structure Research Group, University of Dundee, Dundee, United Kingdom.
Barbara FrankeDepartment of Biology, University of Konstanz, 78457 Konstanz, Germany.
Katarzyna A SkorupkaDepartment of Molecular Physiology and Biological Physics, University of Virginia, 22908 Charlottesville, VA, USA.
David S CafisoDepartment of Chemistry, University of Virginia, Charlottesville, Virginia, USA.
Owen PornillosDepartment of Molecular Physiology and Biological Physics, University of Virginia, 22908 Charlottesville, VA, USA.
Olga MayansDepartment of Biology, University of Konstanz, 78457 Konstanz, Germany.
David G NormanNucleic Acids Structure Research Group, University of Dundee, Dundee, United Kingdom. Electronic address: d.g.norman@dundee.ac.uk.

Funding

MOLECULAR MECHANISMS OF MEMBRANE TRANSPORTR01GM035215 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI DAVID S CAFISO · 1985 to 2026
$7.3M
Structural Virology of Tripartite Motif ProteinsR01GM112508 · NIGMS · UNIVERSITY OF VIRGINIA · PI PORNILLOS, OWEN · 2014 to 2018
$1.6M
Structural Virology of Tripartite Motif ProteinsR01AI150479 · NIAID · UNIVERSITY OF VIRGINIA · PI PORNILLOS, OWEN · 2019 to 2021
$982k
NIAID NIH HHS R01 AI150479NIGMS NIH HHS R01 GM035215NIGMS NIH HHS R01 GM112508Wellcome TrustWellcome Trust 099149/Z/12/Z
6 · The paper itself

Abstract

MuRF1 (TRIM63) is a RING-type E3 ubiquitin ligase with a predicted tripartite TRIM fold. TRIM proteins rely upon the correct placement of an N-terminal RING domain, with respect to C-terminal, specific substrate-binding domains. The TRIM domain organization is orchestrated by a central helical domain that forms an antiparallel coiled-coil motif and mediates the dimerization of the fold. MuRF1 has a reduced TRIM composition characterized by a lack of specific substrate binding domains, but contains in its helical domain a conserved sequence motif termed COS-box that has been speculated to fold independently into an α-hairpin. These characteristics had led to question whether MuRF1 adopts a canonical TRIM fold. Using a combination of electron paramagnetic resonance, on spin-labeled protein, and disulfide crosslinking, we show that TRIM63 follows the structural conservation of the TRIM dimerization domain, observed in other proteins. We also show that the COS-box motif folds back onto the dimerization coiled-coil motif, predictably forming a four-helical bundle at the center of the protein and emulating the architecture of canonical TRIMs.

Indexed as

Crystallography, X-RayElectron Spin Resonance SpectroscopyHumansModels, MolecularMuscle ProteinsProtein ConformationProtein Conformation, alpha-HelicalProtein DomainsProtein FoldingProtein MultimerizationTripartite Motif ProteinsUbiquitin-Protein LigasesMuscle ProteinsTRIM63 protein, humanTripartite Motif ProteinsUbiquitin-Protein Ligasescoiled-coildisulfide cross-linkingMuRF1PELDORTRIM fold

Identifiers

PMID31125568
PMCPMC6599887

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.