Evidence map›Paper›PMID 31124002›Full record

ArticleJournal of biomolecular NMR2019

Dynamics of a type 2 secretion system pseudopilus unraveled by complementary approaches.

Benjamin Bardiaux, Florence Cordier, Sébastien Brier, Aracelys López-Castilla, Nadia Izadi-Pruneyre, Michael Nilges

Open access · hybridAbstract read
In one paragraph

Article in Journal of biomolecular NMR, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Structure and function of minor pilins of type IV pili.Medical microbiology and immunology · 2020
    Review
  6. Integrative methods in structural biology.Journal of biomolecular NMR · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Benjamin BardiauxStructural Bioinformatics Unit, Department of Structural Biology and Chemistry, C3BI, Institut Pasteur; CNRS UMR3528; CNRS USR3756, Paris, France.
Florence CordierStructural Bioinformatics Unit, Department of Structural Biology and Chemistry, C3BI, Institut Pasteur; CNRS UMR3528; CNRS USR3756, Paris, France.
Sébastien BrierBiological NMR Technological Platform, Center for Technological Resources and Research, Department of Structural Biology and Chemistry, Institut Pasteur; CNRS UMR3528, Paris, France.
Aracelys López-CastillaStructural Bioinformatics Unit, Department of Structural Biology and Chemistry, C3BI, Institut Pasteur; CNRS UMR3528; CNRS USR3756, Paris, France.
Nadia Izadi-PruneyreStructural Bioinformatics Unit, Department of Structural Biology and Chemistry, C3BI, Institut Pasteur; CNRS UMR3528; CNRS USR3756, Paris, France. nadia.izadi@pasteur.fr.
Michael NilgesStructural Bioinformatics Unit, Department of Structural Biology and Chemistry, C3BI, Institut Pasteur; CNRS UMR3528; CNRS USR3756, Paris, France. michael.nilges@pasteur.fr.ORCID http://orcid.org/0000-0002-1451-8092
Centre National de la Recherche Scientifique · FR

Funding

Agence Nationae de la Recherche (FR) ANR-11-EQPX-0008Agence Nationae de la Recherche (FR) ANR-14-CE09-0004Agence Nationale de la Recherche PIA/ANR-16-CONV-0005Conseil Régional d'Ile de France SESAME 2014: NMRCHR 14014526)Fondation de la Recherche Medicale (FR) 2017M.DEQ20170839114FP7 Ideas: European Research Council FP7-IDEAS-ERC 294809
6 · The paper itself

Abstract

Secretion pili, bacterial fibers responsible for transporting proteins to the extracellular milieu in some secretion systems, are very strong structures but at the same time highly flexible. Their flexibility and helical symmetry make structure determination at atomic resolution a challenging task. We have previously used an integrative structural biology approach including liquid-state NMR, cryo-electron microscopy (cryo-EM), and modeling to determine the pseudo-atomic resolution structure of the type 2 secretion system pseudopilus in a mutant form, where we employed NMR to determine the high resolution structure of the pilin (the monomer building block of the pilus). In this work, we determine the pseudo-atomic structure of the wild type pilus, and compare the dynamics of wild type and mutant pili by normal mode analysis. We present a detailed NMR analysis of the dynamics of the pilin in isolation, and compare dynamics and solvent accessibility of isolated and assembled pilins by Hydrogen/Deuterium eXchange Mass Spectrometry (HDX-MS). These complementary approaches provide a comprehensive view of internal and overall dynamics of pili, crucial for their function.

Indexed as

Models, MolecularType II Secretion SystemsBacterial ProteinsCryoelectron MicroscopyFimbriae, BacterialNuclear Magnetic Resonance, BiomolecularProtein ConformationSolventsBacterial ProteinsSolventsType II Secretion SystemsCryo-EMDynamicsHDX-MSNMRPiliT2SS

Identifiers

PMID31124002
PMCPMC6692295
OpenAlexW2945379073

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.