Evidence map›Paper›PMID 31123999›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2020

Biotin Identification Proteomics in Three-Dimensional Organotypic Human Skin Cultures.

Calvin J Cable, Nihal Kaplan, Spiro Getsios, Paul M Thomas, Bethany E Perez White

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Keratin isoform shifts modulate motility signals during wound healing.bioRxiv : the preprint server for biology · 2024
    Article
  3. Article
  4. FIH-1 engages novel binding partners to positively influence epithelial proliferation via p63.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Calvin J CableDepartment of Dermatology, Northwestern University, Chicago, IL, USA.
Nihal KaplanDepartment of Dermatology, Northwestern University, Chicago, IL, USA.
Spiro GetsiosDepartment of Dermatology, Northwestern University, Chicago, IL, USA.
Paul M ThomasDepartment of Molecular Biosciences, Northwestern University, Chicago, IL, USA.
Bethany E Perez WhiteDepartment of Dermatology, Northwestern University, Chicago, IL, USA. bethany.perez-white@northwestern.edu.
Northwestern University · USNorthwestern Medicine · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
Northwestern University Clinical and Translational Science Institute (NUCATS)UL1TR001422 · NCATS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI D'AQUILA, RICHARD · 2015 to 2023
$56.8M
TR&D 7: Cell Specific ProteomicsP41GM108569 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2015 to 2024
$13.6M
Northwestern University Skin Disease Research Center Resource-based CenterP30AR075049 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Amy S Paller · 2019 to 2026
$6.6M
The Role of Keratinocytes as Independent ThermosensorsP30AR057216 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI PEREZ WHITE, BETHANY E · 2009 to 2018
$6.0M
EphA/Ephrin-A signaling in epidermal differentiation and diseaseR01AR062110 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LAVKER, ROBERT M · 2012 to 2016
$1.9M
Breaking down barriers: defining the role of EphA2 in building epidermal tight junctions in atopic dermatitisK01AR072773 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI PEREZ WHITE, BETHANY E · 2018 to 2021
$333k
NCATS NIH HHS UL1 TR001422NCI NIH HHS P30 CA060553NIAMS NIH HHS K01 AR072773NIAMS NIH HHS L40 AR076139NIAMS NIH HHS P30 AR057216NIAMS NIH HHS P30 AR075049NIAMS NIH HHS R01 AR062110NIGMS NIH HHS P41 GM108569
6 · The paper itself

Abstract

Biotin identification (BioID) proteomics facilitates the unbiased detection of protein interaction neighborhoods in live cells. The BioID technique relies on the covalent biotin alteration of vicinal proteins by a modified bacterial biotin ligase. The biotin ligase is fused to a protein of interest to identify putative protein-protein interactions. Here, we describe the adaptation of this technique for use in three-dimensional epidermal cultures. Due to the covalent biotin modification of proteins, our protocol allows for the complete solubilization of the total cellular protein content in differentiated keratinocytes. Thus, a comprehensive network of potential interactors of a protein of interest can be mapped.

Indexed as

BiotinHumansOrgan Culture TechniquesProtein Interaction MappingProteomicsSkinBiotin3D skin cultureBioIDBiotin-identification proteomicsEpidermisKeratinocytesProtein-protein interaction

Identifiers

PMID31123999
PMCPMC6874900
OpenAlexW2990759981

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.