Evidence map›Paper›PMID 31123969›Full record

ArticlePlant molecular biology2019

A genome-wide approach to the comprehensive analysis of GASA gene family in Glycine max.

Muhammad Zulfiqar Ahmad, Aiman Sana, Arshad Jamil, Jamal Abdul Nasir, Shakeel Ahmed, Muhammad Uzair Hameed, Abdullah

Abstract read
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Article in Plant molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

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  6. Functional Characterisation ofLife (Basel, Switzerland) · 2024
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  9. The Stylo Cysteine-Rich PeptideInternational journal of molecular sciences · 2024
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Muhammad Zulfiqar AhmadDepartment of Plant Breeding and Genetics, Faculty of Agriculture, Gomal University, Dera Ismail Khan, KP, Pakistan. zulfiqar_nuas@yahoo.com.ORCID http://orcid.org/0000-0001-7201-8937
Aiman SanaDepartment of Plant Breeding and Genetics, Faculty of Agriculture, Gomal University, Dera Ismail Khan, KP, Pakistan.
Arshad JamilDepartment of Plant Breeding and Genetics, Faculty of Agriculture, Gomal University, Dera Ismail Khan, KP, Pakistan.
Jamal Abdul NasirDepartment of Plant Breeding and Genetics, Faculty of Agriculture, Gomal University, Dera Ismail Khan, KP, Pakistan.
Shakeel AhmedInternational Crop Research Center for Stress Resistance, College of Life Sciences, Guangzhou University, Guangzhou, China.
Muhammad Uzair HameedDepartment of Horticulture, Faculty of Agriculture, Gomal University, Dera Ismail Khan, KP, Pakistan.
AbdullahDepartment of Plant Breeding and Genetics, Faculty of Agriculture, Gomal University, Dera Ismail Khan, KP, Pakistan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A vital role of short amino acid gene family, gibberellic acid stimulated arabidopsis (GASA), has been reported in plant growth and development. Although, little information is available about these cysteine rich short proteins in different plant species and this is the first comprehensive approach to exploit available genomic data and to analyze the GASA family in G. max. The phylogenetic and sequence composition analysis distributed the 37 identified GmGASA genes into three groups. Further investigation of the tissue expression pattern, phylogenetic analysis, motif, gene structure, chromosome distributions, duplication patterns, positive-selection pressure and cis-element analysis of 37 GmGASA genes. A conserved GASA domain was found in all identified GmGASA genes and exhibited similar characteristics. The online gene expression profile based analysis of GmGASA genes reveled that these genes were highly expressed in almost all soybean parts and some have high expression in flower which indicates that GmGASA genes displayed special or distinct expression pattern among different tissues. The segmental duplication was found in five pairs from 37 GmGASA genes and was distributed on 15 different chromosomes. The Ka/Ks ratio of 5 pairs of segmentally duplicated gene indicated that after the occurrence of duplication events, the duplicated gene pairs were purified and selected after restrictive functional differentiation. This investigated study of GmGASA gene will useful to support the statement about GASA genes role during flower induction in flowering plants.

Indexed as

Genome, PlantMultigene FamilyArabidopsisChromosomesChromosomes, PlantEvolution, MolecularGene Expression ProfilingGene Expression Regulation, PlantGenetic Association StudiesGibberellinsGlycine maxPhylogenyPlant ProteinsPromoter Regions, GeneticTissue Distributiongibberellic acidGibberellinsPlant ProteinsGASAGenome widePositive selectionSoybean

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.