Evidence map›Paper›PMID 31123251›Full record

ArticleNature communications2019

Emergence of active nematics in chaining bacterial biofilms.

Yusuf Ilker Yaman, Esin Demir, Roman Vetter, Askin Kocabas

Abstract readVideo-Audio Media
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
  2. Vector nematodynamics with symmetry-driven energy exchange.The European physical journal. E, Soft matter · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Nematic cell alignment directs calcium waves.bioRxiv : the preprint server for biology · 2025
    Article
  8. Self-propulsive active nematics.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2025
    Article
  9. Article
  10. Synergistic action of specialized metabolites from divergent biosynthesis in the human oral microbiome.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Dissecting the physics of bacterial biofilms with agent-based simulations.Current opinion in solid state & materials science · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yusuf Ilker YamanDepartment of Physics, Koç University, 34450, Sarıyer, Istanbul, Turkey.ORCID http://orcid.org/0000-0003-4094-616X
Esin DemirBio-Medical Sciences and Engineering Program, Koç University, 34450, Sarıyer, Istanbul, Turkey.
Roman VetterDepartment of Biosystems Science and Engineering, ETH Zurich, 4058, Basel, Switzerland.ORCID http://orcid.org/0000-0003-2901-7036
Askin KocabasDepartment of Physics, Koç University, 34450, Sarıyer, Istanbul, Turkey. akocabas@ku.edu.tr.ORCID http://orcid.org/0000-0002-6930-1202

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Growing tissue and bacterial colonies are active matter systems where cell divisions and cellular motion generate active stress. Although they operate in the non-equilibrium regime, these biological systems can form large-scale ordered structures. How mechanical instabilities drive the dynamics of active matter systems and form ordered structures are not well understood. Here, we use chaining Bacillus subtilis, also known as a biofilm, to study the relation between mechanical instabilities and nematic ordering. We find that bacterial biofilms have intrinsic length scales above which a series of mechanical instabilities occur. Localized stress and friction drive buckling and edge instabilities which further create nematically aligned structures and topological defects. We also observe that topological defects control stress distribution and initiate the formation of sporulation sites by creating three-dimensional structures. In this study we propose an alternative active matter platform to study the essential roles of mechanics in growing biological tissue.

Indexed as

BiofilmsBacillus subtilisBiomechanical PhenomenaIntravital MicroscopyMicroscopy, Electron, ScanningMicroscopy, FluorescenceStress, MechanicalTime-Lapse Imaging

Identifiers

PMID31123251
PMCPMC6533293

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.