Evidence map›Paper›PMID 31120963›Full record

ArticlePloS one2019

Expression levels of inositol phosphorylceramide synthase modulate plant responses to biotic and abiotic stress in Arabidopsis thaliana.

Elizabeth C Pinneh, Rhea Stoppel, Heather Knight, Marc R Knight, Patrick G Steel, Paul W Denny

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Evaluation of theACS infectious diseases · 2024
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Elizabeth C PinnehDepartment of Biosciences, Durham University, Durham, United Kingdom.
Rhea StoppelBayer AG, Crop Science Division, Industriepark Höchst, Frankfurt am Main, Germany.
Heather KnightDepartment of Biosciences, Durham University, Durham, United Kingdom.
Marc R KnightDepartment of Biosciences, Durham University, Durham, United Kingdom.
Patrick G SteelDepartment of Chemistry, Durham University, Durham, United Kingdom.
Paul W DennyDepartment of Biosciences, Durham University, Durham, United Kingdom.ORCID 0000-0002-5051-1613

Funding

Biotechnology and Biological Sciences Research Council BB/K012703/1
6 · The paper itself

Abstract

This research was undertaken to investigate the global role of the plant inositol phosphorylceramide synthase (IPCS), a non-mammalian enzyme previously shown to be associated with the pathogen response. RNA-Seq analyses demonstrated that over-expression of inositol phosphorylceramide synthase isoforms AtIPCS1, 2 or 3 in Arabidopsis thaliana resulted in the down-regulation of genes involved in plant response to pathogens. In addition, genes associated with the abiotic stress response to salinity, cold and drought were found to be similarly down-regulated. Detailed analyses of transgenic lines over-expressing AtIPCS1-3 at various levels revealed that the degree of down-regulation is specifically correlated with the level of IPCS expression. Singular enrichment analysis of these down-regulated genes showed that AtIPCS1-3 expression affects biological signaling pathways involved in plant response to biotic and abiotic stress. The up-regulation of genes involved in photosynthesis and lipid localization was also observed in the over-expressing lines.

Indexed as

Gene Expression Regulation, PlantStress, PhysiologicalArabidopsisArabidopsis ProteinsErwinia amylovoraGene Expression ProfilingHexosyltransferasesPlant DiseasesArabidopsis ProteinsHexosyltransferasesphosphatidylinositol-ceramide phosphoinositol transferase

Identifiers

PMID31120963
PMCPMC6532887

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.