Evidence map›Paper›PMID 31120323›Full record

ArticleRNA biology2019

Analysis of pig transcriptomes suggests a global regulation mechanism enabling temporary bursts of circular RNAs.

Annie Robic, Thomas Faraut, Sarah Djebali, Rosemarie Weikard, Katia Feve, Sarah Maman, Christa Kuehn

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Annie Robica GenPhySE, Université de Toulouse, INRA, ENVT , Castanet-Tolosan , France.ORCID 0000-0003-3071-8614
Thomas Farauta GenPhySE, Université de Toulouse, INRA, ENVT , Castanet-Tolosan , France.ORCID 0000-0001-5156-3434
Sarah Djebalia GenPhySE, Université de Toulouse, INRA, ENVT , Castanet-Tolosan , France.ORCID 0000-0002-0599-1267
Rosemarie Weikardb Institute of Genome Biology, Leibniz Institute for Farm Animal Biology (FBN) , Dummerstorf , Germany.
Katia Fevea GenPhySE, Université de Toulouse, INRA, ENVT , Castanet-Tolosan , France.
Sarah Mamana GenPhySE, Université de Toulouse, INRA, ENVT , Castanet-Tolosan , France.
Christa Kuehnb Institute of Genome Biology, Leibniz Institute for Farm Animal Biology (FBN) , Dummerstorf , Germany.ORCID 0000-0002-0216-424X
École Nationale Vétérinaire de Toulouse · FRResearch Institute for Farm Animal Biology (FBN) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To investigate the dynamics of circRNA expression in pig testes, we designed specific strategies to individually study circRNA production from intron lariats and circRNAs originating from back-splicing of two exons. By applying these methods on seven Total-RNA-seq datasets sampled during the testicular puberty, we detected 126 introns in 114 genes able to produce circRNAs and 5,236 exonic circRNAs produced by 2,516 genes. Comparing our RNA-seq datasets to datasets from the literature (embryonic cortex and postnatal muscle stages) revealed highly abundant intronic and exonic circRNAs in one sample each in pubertal testis and embryonic cortex, respectively. This abundance was due to higher production of circRNA by the same genes in comparison to other testis samples, rather than to the recruitment of new genes. No global relationship between circRNA and mRNA production was found. We propose ExoCirc-9244 (

Indexed as

Gene Expression RegulationAnimalsEmbryo, MammalianExonsIntronsMaleMusclesReproducibility of ResultsRNA, CircularSwineTestisTranscriptomeRNA, Circularabundance in circRNACircular RNAsintronic circRNAlariatmulti-exon circRNApubertal testisregulation circRNA productionsisRNASMARCA5steroids production

Identifiers

PMID31120323
PMCPMC6693536
OpenAlexW2946520793

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.