Evidence map›Paper›PMID 31119570›Full record

ArticleBreast cancer research and treatment2019

Assessment of PARP4 as a candidate breast cancer susceptibility gene.

Aldo Prawira, Prabhakaran Munusamy, Jimin Yuan, Claire Hian Tzer Chan, Geok Ling Koh, Timothy Wai Ho Shuen, Jiancheng Hu, Yoon Sim Yap, Min Han Tan, Peter Ang and 1 more

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Article in Breast cancer research and treatment, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

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  9. Functional roles of ADP-ribosylation writers, readers and erasers.Frontiers in cell and developmental biology · 2022
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  10. European urology open science · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Aldo Prawira *Division of Cellular and Molecular Research, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore, Singapore.
Prabhakaran Munusamy *Division of Cellular and Molecular Research, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore, Singapore.
Jimin YuanDivision of Cellular and Molecular Research, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore, Singapore.
Claire Hian Tzer ChanDivision of Cellular and Molecular Research, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore, Singapore.
Geok Ling KohDivision of Cellular and Molecular Research, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore, Singapore.
Timothy Wai Ho ShuenDepartment of Medical Oncology, National Cancer Centre, Singapore, Singapore.
Jiancheng HuDivision of Cellular and Molecular Research, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore, Singapore.
Yoon Sim YapDepartment of Medical Oncology, National Cancer Centre, Singapore, Singapore.
Min Han TanDepartment of Medical Oncology, National Cancer Centre, Singapore, Singapore.
Peter AngDepartment of Medical Oncology, National Cancer Centre, Singapore, Singapore.
Ann Siew Gek LeeDivision of Cellular and Molecular Research, Humphrey Oei Institute of Cancer Research, National Cancer Centre, Singapore, Singapore. dmslsg@nccs.com.sg.ORCID http://orcid.org/0000-0001-9719-9332
National Cancer Centre Singapore · SGDuke-NUS Medical School · SGGleneagles Hospital · SGInstitute of Bioengineering and Nanotechnology · SGNational University of Singapore · SG

Funding

IAF-ICP (funded by A*STAR, EDB, Enterprise Singapore, NRF) I1801E0021National Medical Research Council NMRC/CBRG/0034/2013
6 · The paper itself

Abstract

purposePARP4 has been proposed as a candidate breast cancer susceptibility gene. However, its function and involvement in breast carcinogenesis is unclear. We sought to determine the variant frequency of PARP4 in BRCA-negative women referred for genetic testing from Singapore and to perform functional analyses of PARP4.

methodsNext-generation sequencing of PARP4 was conducted for 198 BRCA-negative cases from Singapore. Three independent case-control association analyses of PARP4 were performed for (1) our Singaporean cohort, (2) three dbGaP datasets, and (3) cases from TCGA, with controls from the Exome Aggregation Consortium (ExAC). PARP4 knockout cells were generated utilizing the CRISPR-Cas9 approach in MDA-MB-231 (breast cancer) and MCF10A (normal breast) cell lines, and colony formation, cell proliferation, and migration assays carried out.

resultsCandidate variants in PARP4 were identified in 5.5% (11/198) of our Singapore cohort. Case-control association studies for our cases and the dbGaP datasets showed no significant association. However, a significant association was observed for PARP4 variants when comparing 988 breast cancer cases from the TCGA provisional data and 53,105 controls from ExAC (ALL) (OR 0.249, 95% CI 0.139-0.414, P = 2.86 × 10

conclusionsTaken together, our results do not support that PARP4 functions as a cancer susceptibility gene. This study highlights the importance of performing functional analyses for candidate cancer predisposition genes.

Indexed as

Biomarkers, TumorGenetic Predisposition to DiseaseAdultAgedBreast NeoplasmsCase-Control StudiesCell Line, TumorCell ProliferationComputational BiologyFemaleGene Knockdown TechniquesGenetic Association StudiesGenetic TestingHeterozygoteHigh-Throughput Nucleotide SequencingHumansBiomarkers, TumorNuclear ProteinsPARP4 protein, humanBreast cancerCancer predispositionGermline variantsPARP4

Identifiers

PMID31119570
OpenAlexW2945479277

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.