Evidence map›Paper›PMID 31118431›Full record

ArticleScientific reports2019

A systematic study towards evolutionary and epidemiological dynamics of currently predominant H5 highly pathogenic avian influenza viruses in Vietnam.

Lam Thanh Nguyen, Simon M Firestone, Mark A Stevenson, Neil D Young, Leslie D Sims, Duc Huy Chu, Tien Ngoc Nguyen, Long Van Nguyen, Tung Thanh Le, Hung Van Nguyen and 8 more

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Lam Thanh NguyenLaboratory of Microbiology, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, Hokkaido, 060-0818, Japan.
Simon M FirestoneMelbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, 3010, Australia.ORCID http://orcid.org/0000-0002-3239-1419
Mark A StevensonMelbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, 3010, Australia. mark.stevenson1@unimelb.edu.au.ORCID http://orcid.org/0000-0003-1890-9784
Neil D YoungMelbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, 3010, Australia.ORCID http://orcid.org/0000-0001-8756-229X
Leslie D SimsAsia Pacific Veterinary Information Services, Montmorency, Victoria, 3094, Australia.
Duc Huy ChuDepartment and Sub-Departments of Animal Health, Ministry of Agriculture and Rural Development, Ha Noi, Vietnam.
Tien Ngoc NguyenDepartment and Sub-Departments of Animal Health, Ministry of Agriculture and Rural Development, Ha Noi, Vietnam.
Long Van NguyenDepartment and Sub-Departments of Animal Health, Ministry of Agriculture and Rural Development, Ha Noi, Vietnam.
Tung Thanh LeDepartment and Sub-Departments of Animal Health, Ministry of Agriculture and Rural Development, Ha Noi, Vietnam.
Hung Van NguyenDepartment and Sub-Departments of Animal Health, Ministry of Agriculture and Rural Development, Ha Noi, Vietnam.
Hung Nam NguyenDepartment and Sub-Departments of Animal Health, Ministry of Agriculture and Rural Development, Ha Noi, Vietnam.
Tien Ngoc TienRegional Animal Health Office VII, Department of Animal Health, Ministry of Agriculture and Rural Development, Can Tho, Vietnam.
Tho Dang NguyenNational Center for Veterinary Diagnostics, Department of Animal Health, Ministry of Agriculture and Rural Development, Ha Noi, Vietnam.
Bich Ngoc TranDepartment of Veterinary Medicine, College of Agriculture, Can Tho University, Can Tho, Vietnam.
Keita MatsunoLaboratory of Microbiology, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, Hokkaido, 060-0818, Japan.ORCID http://orcid.org/0000-0002-4205-6526
Masatoshi OkamatsuLaboratory of Microbiology, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, Hokkaido, 060-0818, Japan.
Hiroshi KidaGlobal Institution for Collaborative Research and Education, Hokkaido University, Sapporo, Hokkaido, 001-0020, Japan.
Yoshihiro SakodaLaboratory of Microbiology, Faculty of Veterinary Medicine, Hokkaido University, Sapporo, Hokkaido, 060-0818, Japan. sakoda@vetmed.hokudai.ac.jp.ORCID http://orcid.org/0000-0001-7021-1688

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study aimed to elucidate virus, host and environmental dynamics of Vietnamese H5 highly pathogenic avian influenza viruses (HPAIVs) during 2014-2017. Epidemiologically, H5 HPAIVs were frequently detected in apparently healthy domestic and Muscovy ducks and therefore these are preferred species for H5 HPAIV detection in active surveillance. Virologically, clade 2.3.2.1c and 2.3.4.4 H5 HPAIVs were predominant and exhibited distinct phylogeographic evolution. Clade 2.3.2.1c viruses clustered phylogenetically in North, Central and South regions, whilst clade 2.3.4.4 viruses only detected in North and Central regions formed small groups. These viruses underwent diverse reassortment with existence of at least 12 genotypes and retained typical avian-specific motifs. These H5 HPAIVs exhibited large antigenic distance from progenitor viruses and commercial vaccines currently used in poultry. Bayesian phylodynamic analysis inferred that clade 2.3.2.1c viruses detected during 2014-2017 were likely descended from homologous clade viruses imported to Vietnam previously and/or preexisting Chinese viruses during 2012-2013. Vietnamese clade 2.3.4.4 viruses closely shared genetic traits with contemporary foreign spillovers, suggesting that there existed multiple transboundary virus dispersals to Vietnam. This study provides insights into the evolution of Vietnamese H5 HPAIVs and highlights the necessity of strengthening control measures such as, preventive surveillance and poultry vaccination.

Indexed as

AnimalsAntibodies, ViralAntigenic VariationChickensCross ReactionsDucksEvolution, MolecularGenes, ViralGenetic VariationGeography, MedicalHemagglutinin Glycoproteins, Influenza VirusInfluenza A virusInfluenza in BirdsPhylogenyPopulation SurveillancePoultry DiseasesAntibodies, Viralhemagglutinin, avian influenza A virusHemagglutinin Glycoproteins, Influenza Virus

Identifiers

PMID31118431
PMCPMC6531488

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.