Evidence map›Paper›PMID 31118272›Full record

ArticleThe Journal of biological chemistry2019

Structural basis of resistance of mutant RET protein-tyrosine kinase to its inhibitors nintedanib and vandetanib.

Simon S Terzyan, Tao Shen, Xuan Liu, Qingling Huang, Peng Teng, Mi Zhou, Frank Hilberg, Jianfeng Cai, Blaine H M Mooers, Jie Wu

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 56 citations in OpenAlex.

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  19. RET kinase inhibitors forTherapeutic advances in medical oncology · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Simon S TerzyanFrom the Departments of Biochemistry and Molecular Biology and.
Tao ShenPathology.
Xuan LiuPathology.
Qingling Huangthe Department of Molecular Oncology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, Florida 33612.
Peng Tengthe Department of Chemistry, University of South Florida, Tampa, Florida 33620, and.
Mi Zhouthe Department of Chemistry, University of South Florida, Tampa, Florida 33620, and.
Frank Hilbergthe Department of Pharmacology, Boehringer Ingelheim, 1121 Vienna, Austria.
Jianfeng Caithe Department of Chemistry, University of South Florida, Tampa, Florida 33620, and.
Blaine H M MooersFrom the Departments of Biochemistry and Molecular Biology and blaine-mooers@ouhsc.edu.ORCID 0000-0001-8181-8987
Jie WuPathology, jie-wu@ouhsc.edu.ORCID 0000-0002-2864-1606
University of South Florida · USMoffitt Cancer Center · USUniversity of Oklahoma Health Sciences Center · USBoehringer Ingelheim (Austria) · ATInstitute of Molecular Biology and Biophysics · RU

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Tissue Pathology Shared ResourceP30CA225520 · NCI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI Michael S. Businelle · 2018 to 2026
$27.1M
TUMOR RESISTANCE MECHANISMS TO ANTI-VEGF THERAPY IN PROSTATE CANCER (Sukyung Woo)P20GM103639 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI HANNAFON, BETHANY · 2012 to 2022
$21.3M
Structure-Function Studies of MsvR, a Methanogen-Specific Transcriptional RegulaP20GM103640 · NIGMS · UNIVERSITY OF OKLAHOMA · PI MOOERS, BLAINE H. M. · 2012 to 2021
$20.4M
Recognition of Abeta monomeric helixR01AG056569 · NIA · UNIVERSITY OF SOUTH FLORIDA · PI CHUANHAI CAO, Jianfeng Cai · 2017 to 2026
$4.1M
Roles of PTPN11 in regulating and driving epithelial cancerR01CA178456 · NCI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI WU, JIE · 2013 to 2017
$1.6M
Modeling the KIF5B-RET Fusion Gene of Lung Cancer in VivoR21CA175603 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI WU, JIE · 2013 to 2014
$397k
NCI NIH HHS P30 CA225520NCI NIH HHS R01 CA178456NCI NIH HHS R21 CA175603NIA NIH HHS R01 AG056569NIGMS NIH HHS P20 GM103639NIGMS NIH HHS P20 GM103640NIGMS NIH HHS P41 GM103393
6 · The paper itself

Abstract

RET is a transmembrane growth factor receptor. Aberrantly activated RET is found in several types of human cancer and is a target for treating RET aberration-associated cancer. Multiple clinically relevant RET protein-tyrosine kinase inhibitors (TKIs) have been identified, but how TKIs bind to RET is unknown except for vandetanib. Nintedanib is a RET TKI that inhibits the vandetanib-resistant RET(G810A) mutant. Here, we determined the X-ray co-crystal structure of RET kinase domain-nintedanib complex to 1.87 Å resolution and a RET(G810A) kinase domain crystal structure to 1.99 Å resolution. We also identified a vandetanib-resistant RET(L881V) mutation previously found in familial medullary thyroid carcinoma. Drug-sensitivity profiling of RET(L881V) revealed that it remains sensitive to nintedanib. The RET-nintedanib co-crystal structure disclosed that Leu-730 in RET engages in hydrophobic interactions with the piperazine, anilino, and phenyl groups of nintedanib, providing a structural basis for explaining that the p.L730V mutation identified in nine independently isolated cell lines resistant to nintedanib. Comparisons of RET-nintedanib, RET(G810A), and RET-vandetanib crystal structures suggested that the solvent-front Ala-810 makes hydrophobic contacts with a methyl group and aniline in nintedanib and blocks water access to two oxygen atoms of vandetanib, resulting in an energetic penalty for burying polar groups. Of note, even though the p.L881V mutation did not affect sensitivity to nintedanib, RET(L881V) was resistant to nintedanib analogs lacking a phenyl group. These results provide structural insights into resistance of RET mutants against the TKIs nintedanib and vandetanib.

Indexed as

AnimalsBinding SitesCell Line, TumorCrystallography, X-RayDrug Resistance, NeoplasmHumansHydrophobic and Hydrophilic InteractionsIndolesMiceMolecular Dynamics SimulationMutagenesis, Site-DirectedPiperidinesProtein Kinase InhibitorsProtein Structure, TertiaryProto-Oncogene Proteins c-retQuinazolinesIndolesnintedanibPiperidinesProtein Kinase InhibitorsProto-Oncogene Proteins c-retQuinazolinesRecombinant Proteinsvandetanibcancer biologycancer therapyinhibitorKIF5B–RETlung cancermutantRETstructural biologythyroidtyrosine-protein kinase (tyrosine kinase)

Identifiers

PMID31118272
PMCPMC6615680
OpenAlexW2946527179

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.