Evidence map›Paper›PMID 31117934›Full record

ArticleBMC genomics2019

Overlapping and unique roles played by ROCK1 and 2 in the modulation of coding and long noncoding RNA expression.

He-Ming Zhou, Ji-Gang Zhang, Xue Zhang, Guo-Rong Fan, Gao-Lin Liu, Qin Li

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

He-Ming ZhouDepartment of Clinical Pharmacy, Shanghai General Hospital, School of medicine, Shanghai Jiao Tong University, No.100 Haining Road, Shanghai, 200080, People's Republic of China.
Ji-Gang ZhangDepartment of Clinical Pharmacy, Shanghai General Hospital, School of medicine, Shanghai Jiao Tong University, No.100 Haining Road, Shanghai, 200080, People's Republic of China.
Xue ZhangDepartment of Clinical Pharmacy, Shanghai General Hospital, School of medicine, Shanghai Jiao Tong University, No.100 Haining Road, Shanghai, 200080, People's Republic of China.
Guo-Rong FanDepartment of Clinical Pharmacy, Shanghai General Hospital, School of medicine, Shanghai Jiao Tong University, No.100 Haining Road, Shanghai, 200080, People's Republic of China.
Gao-Lin LiuDepartment of Clinical Pharmacy, Shanghai General Hospital, School of medicine, Shanghai Jiao Tong University, No.100 Haining Road, Shanghai, 200080, People's Republic of China.
Qin LiDepartment of Clinical Pharmacy, Shanghai General Hospital, School of medicine, Shanghai Jiao Tong University, No.100 Haining Road, Shanghai, 200080, People's Republic of China. liqin0626@hotmail.com.
Shanghai Jiao Tong University · CNShanghai First People's Hospital · CN

Funding

Interdisciplinary Program of Shanghai Jiao Tong University No.YG2015QN18Interdisciplinary Program of Shanghai Jiao Tong University No. YG2017MS29National Natural Science Foundation of China No.81602524Potential Discipline of Shanghai Jiao Tong University School of medicine No. 0509N16001
6 · The paper itself

Abstract

backgroundOur previous study described the crucial role of Rho-associated coiled-coil containing-kinases (ROCK) in hepatocellular carcinoma (HCC). However, the potential significance of long noncoding RNA downstream of ROCK is largely unknown. Here, a comprehensive comparative bioinformatics analysis of a microarray of an MHCC-97H cell line overexpressing ROCK1 or ROCK2 was performed.

resultsNumerous lncRNAs and mRNAs were deregulated by Rho-associated coiled-coil containing kinases 1 and 2. These results were consistent with the qRT-PCR results. Compared with MHCC-97H-Con, which was transfected with a null vector, the GO analysis revealed differentially expressed mRNAs (DEmRNAs) in MHCC-97H-ROCK1 (ROCK1 was overexpressed) enriched in apoptotic cell clearance, the cyclooxygenase pathway and bone trabecula morphogenesis; the DEmRNAs in MHCC-97H-ROCK2 (ROCK2 was overexpressed) were enriched in VEGF production, chemokine-associated signaling pathways, acute inflammatory response and vasoconstriction. Compared with MHCC-97H-ROCK2, the DEmRNAs in MHCC-97H-ROCK1 were involved in the JAK-STAT cascade, the Akt signaling pathway and the activity of several different peptidases. The pathway analysis of ROCK1 and ROCK2 revealed an overlap in the VEGF signaling pathway, ECM-receptor interaction, and adhesion and differences in the PPAR signaling pathway and mismatch repair. The predicted targets of the differentially expressed lncRNA (DElncRNAs) were enriched in the p53 signaling pathway, Jak-STAT signaling pathway, etc. Several hub DElncRNAs were identified.

conclusionsROCK1 and 2 modulate the expression of numerous mRNAs and lncRNAs and may participate in several signaling pathways in HCC. Several hub molecules were identified in the lncRNA-mRNA networks. Our results provide baseline data for ROCK1 and 2 regulation in HCC that might have implications for further research.

Indexed as

Gene Expression Regulation, NeoplasticComputational BiologyGene Expression ProfilingGene Regulatory NetworksHumansLiver Neoplasmsrho-Associated KinasesRNA, Long NoncodingRNA, MessengerSignal TransductionTumor Cells, Culturedrho-Associated KinasesRNA, Long NoncodingRNA, MessengerROCK1 protein, humanROCK2 protein, humanDElncRNADEmRNAMicroarrayROCK

Identifiers

PMID31117934
PMCPMC6532151
OpenAlexW2946913948

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.