Evidence map›Paper›PMID 31117395›Full record

ArticleACS chemical biology2019

Depsipeptide Aspergillicins Revealed by Chromatin Reader Protein Deletion.

Claudio Greco, Brandon T Pfannenstiel, James C Liu, Nancy P Keller

Abstract read
In one paragraph

Article in ACS chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. An environmental isolate ofFrontiers in microbiology · 2024
    Article
  5. Article
  6. Mining theJournal of fungi (Basel, Switzerland) · 2023
    Article
  7. Review
  8. Identifying Fungal Secondary Metabolites and Their Role in Plant Pathogenesis.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  9. Genetic Regulation of Mycotoxin Biosynthesis.Journal of fungi (Basel, Switzerland) · 2022
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Microevolution in the pansecondary metabolome ofProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Claudio GrecoDepartment of Medical Microbiology and Immunology , University of Wisconsin-Madison , Madison , Wisconsin , United States.ORCID 0000-0003-3067-0999
Brandon T PfannenstielDepartment of Genetics , University of Wisconsin-Madison , Madison , Wisconsin , United States.
James C LiuDepartment of Medical Microbiology and Immunology , University of Wisconsin-Madison , Madison , Wisconsin , United States.
Nancy P KellerDepartment of Medical Microbiology and Immunology , University of Wisconsin-Madison , Madison , Wisconsin , United States.ORCID 0000-0002-4386-9473
University of Wisconsin–Madison · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007133 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PERNA, NICOLE T · 1985 to 2023
$16.5M
Comprehensive analysis of NRPS-derived metabolomes of three Aspergillus speciesR01GM112739 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KELLER, NANCY P · 2015 to 2023
$2.8M
Laser-Enhanced NMR Instrumentation for Chemical and Biochemical ResearchS10OD012245 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI CAVAGNERO, SILVIA · 2013 to 2013
$1.0M
NIGMS NIH HHS R01 GM112739NIGMS NIH HHS T32 GM007133NIH HHS S10 OD012245
6 · The paper itself

Abstract

Expression of biosynthetic gene clusters (BGCs) in filamentous fungi is highly regulated by epigenetic remodeling of chromatin structure. Two classes of histone modifying proteins, writers (which place modifications on histone tails) and erasers (which remove the modifications), have been used extensively to activate cryptic BGCs in fungi. Here, for the first time, we present activation of a cryptic BGC by a third category of histone modifying proteins, reader proteins that recognize histone tail modifications and commonly mediate writer and eraser activity. Loss of the reader SntB (Δ sntB) resulted in the synthesis of two cryptic cyclic hexa-depsipeptides, aspergillicin A and aspergillicin F, in the fungus Aspergillus flavus. Liquid chromatography, high resolution mass spectrometry, and NMR analysis coupled with bioinformatic analysis and gene deletion experiments revealed that a six adenylation (A) domain nonribosomal peptide synthetase (NRPS, called AgiA) and O-methyltransferase (AgiB) were required for metabolite formation. A proposed biosynthetic scheme illustrates the requirement for unusual NRPS domains, such as a starting condensation domain and a thiolesterase domain proposed to cyclize the depsipeptides. This latter activity has only been found in bacterial but not fungal NRPS. The agi BGC-unique to A. flavus and some closely related species (e.g., A. oryzae, A. arachidicola)-is located next to a conserved Aspergillus siderophore BGC syntenic to other fungi.

Indexed as

Aspergillus flavusChromatinDepsipeptidesGenes, FungalMultigene FamilyPeptide SynthasesSiderophoresaspergillicin FChromatinDepsipeptidesnon-ribosomal peptide synthasePeptide SynthasesSiderophores

Identifiers

PMID31117395
PMCPMC6751569
OpenAlexW2945808290

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.