Evidence map›Paper›PMID 31116766›Full record

ArticlePloS one2019

Standardisation of flow cytometry for whole blood immunophenotyping of islet transplant and transplant clinical trial recipients.

Elvira Jimenez Vera, Yi Vee Chew, Leigh Nicholson, Heather Burns, Patricia Anderson, Hsiao-Ting Chen, Lindy Williams, Karen Keung, Negar Talaei Zanjani, Suat Dervish and 7 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Elvira Jimenez VeraCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, Australia.
Yi Vee ChewCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, Australia.
Leigh NicholsonCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, Australia.
Heather BurnsCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, Australia.
Patricia AndersonCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, Australia.
Hsiao-Ting ChenCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, Australia.
Lindy WilliamsCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, Australia.
Karen KeungCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, Australia.
Negar Talaei ZanjaniCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, Australia.
Suat DervishFlow Cytometry Core Facility, Westmead Institute for Medical Research, Sydney, Australia.
Ellis PatrickSchool of Mathematics and Statistics, The University of Sydney, Sydney, Australia.
Xin Maggie WangFlow Cytometry Core Facility, Westmead Institute for Medical Research, Sydney, Australia.
Shounan YiCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, Australia.
Wayne HawthorneCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, Australia.
Stephen AlexanderCentre for Kidney Research, Children's Hospital at Westmead, Sydney, Australia.
Philip J O'ConnellCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, Australia.
Min HuCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, Australia.ORCID 0000-0003-3750-220X
Westmead Institute for Medical Research · AUThe University of Sydney · AUChildren's Hospital at Westmead · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the immunological phenotype of transplant recipients is important to improve outcomes and develop new therapies. Immunophenotyping of whole peripheral blood (WPB) by flow cytometry is a rapid method to obtain large amounts of data relating to the outcomes of different transplant treatments with limited patient impact. Healthy individuals and patients with type 1 diabetes (T1D) enrolled in islet transplantation were recruited and WPB was collected. 46 fluorochrome-conjugated mouse-anti-human antibodies were used (43 of 46 antibodies were titrated). BD cytometer setup and tracking beads were used to characterize and adjust for cytometer performance. Antibody cocktails were pre-mixed <60 minutes before staining. Multicolour panels were designed based on fluorochrome brightness, antigen density, co-expression, and fluorochrome spillover into non-primary detectors in each panel on a 5 laser flow cytometer. WPB sample staining used 50-300 μl WPB for each panel and was performed within 2 hours of blood sample collection. Samples were acquired on a BD-LSRFortessa. The operating procedures, including specimen collection, antibody cocktails, staining protocol, flow-cytometer setup and data analysis, were standardized. The staining index of 43 antibodies and the spillover spreading matrix for each panel was calculated. The final concentrations for the 46 antibodies used was determined for staining of WPB samples. Absolute cell-count and 7 leukocyte profiling panels consisting of subsets and/or status of granulocytes, monocytes, dendritic, B, NK, and T cells including regulatory T cells (Tregs) and NKT were designed and established on a 5 laser BD-LSR Fortessa. 13 T1D patients, including 4 islet transplant recipients and 8 healthy controls, were evaluated. The ability to reproducibly measure immune subsets and immune-profiles of islet transplant patients up to 18 months post transplantation has been established as a tool to measure immune cell reconstitution after transplantation.

Indexed as

AntibodiesCase-Control StudiesClinical Trials as TopicDiabetes Mellitus, Type 1Flow CytometryHumansImmunophenotypingIslets of Langerhans TransplantationTransplant RecipientsAntibodies

Identifiers

PMID31116766
PMCPMC6530858
OpenAlexW2946655479

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.