Evidence map›Paper›PMID 31115167›Full record

ArticleMolecular plant pathology2019

A complex eIF4E locus impacts the durability of va resistance to Potato virus Y in tobacco.

Vincent Michel, Emilie Julio, Thierry Candresse, Julien Cotucheau, Christophe Decorps, Roxane Volpatti, Benoît Moury, Laurent Glais, Emmanuel Jacquot, François Dorlhac de Borne and 3 more

Open access · goldAbstract read
In one paragraph

Article in Molecular plant pathology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  5. Review
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  8. Review
  9. Loss-of-function ofBreeding science · 2021
    Article
  10. Article
  11. Translational gene regulation in plants: A green new deal.Wiley interdisciplinary reviews. RNA · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Vincent MichelUMR 1332 Biologie du Fruit et Pathologie, INRA, University Bordeaux, 71 Av. E. Bourlaux, Villenave d'Ornon Cedex CS 20032, 33882, France.
Emilie JulioSeita Imperial Tobacco, La Tour, 24100, Bergerac, France.
Thierry CandresseUMR 1332 Biologie du Fruit et Pathologie, INRA, University Bordeaux, 71 Av. E. Bourlaux, Villenave d'Ornon Cedex CS 20032, 33882, France.
Julien CotucheauSeita Imperial Tobacco, La Tour, 24100, Bergerac, France.
Christophe DecorpsSeita Imperial Tobacco, La Tour, 24100, Bergerac, France.
Roxane VolpattiSeita Imperial Tobacco, La Tour, 24100, Bergerac, France.
Benoît MouryUnité de Pathologie Végétale, INRA, Centre Recherche PACA, Domaine Saint Maurice, Montfavet Cedex CS 60094, F84143, France.ORCID 0000-0003-3081-1034
Laurent GlaisUMR IGEPP, INRA, Domaine de la Motte, BP 35327, Le Rheu Cedex, 35653, France.
Emmanuel JacquotINRA-Cirad-Supagro Montpellier, UMR BGPI, Montpellier Cedex, 34398, France.
François Dorlhac de BorneSeita Imperial Tobacco, La Tour, 24100, Bergerac, France.
Véronique DecroocqUMR 1332 Biologie du Fruit et Pathologie, INRA, University Bordeaux, 71 Av. E. Bourlaux, Villenave d'Ornon Cedex CS 20032, 33882, France.
Jean-Luc GalloisINRA-UR 1052, GAFL Domaine St Maurice - CS 60094, Montfavet Cedex, F-84143.
Sylvie German-RetanaUMR 1332 Biologie du Fruit et Pathologie, INRA, University Bordeaux, 71 Av. E. Bourlaux, Villenave d'Ornon Cedex CS 20032, 33882, France.ORCID 0000-0002-8702-2856
Biologie du Fruit et Pathologie · FRCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRCentre Provence-Alpes-Côte d'Azur · FRGénétique et amélioration des fruits et légumes · FRInstitut de Génétique, Environnement et Protection des Plantes · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many recessive resistances against potyviruses are mediated by eukaryotic translation initiation factor 4E (eIF4E). In tobacco, the va resistance gene commonly used to control Potato virus Y (PVY) corresponds to a large deletion affecting the eIF4E-1 gene on chromosome 21. Here, we compared the resistance durability conferred by various types of mutations affecting eIF4E-1 (deletions of various sizes, frameshift or nonsense mutations). The 'large deletion' genotypes displayed the broadest and most durable resistance, whereas frameshift and nonsense mutants displayed a less durable resistance, with rapid and frequent apparition of resistance-breaking variants. In addition, genetic and transcriptomic analyses revealed that resistance durability is strongly impacted by a complex genetic locus on chromosome 14, which contains three other eIF4E genes. One of these, eIF4E-3, is rearranged as a hybrid gene between eIF4E-2 and eIF4E-3 (eIF4E-

Indexed as

Disease ResistanceGenes, PlantGenetic LociAmino Acid SubstitutionChromosomes, PlantEcotypeEukaryotic Initiation Factor-4EGene DosageGene Expression Regulation, PlantGenotypeModels, BiologicalMutationNicotianaPhenotypePhylogenyPlant DiseasesEukaryotic Initiation Factor-4EdurabilityeIF4EEthyl methanesulfonate mutantpotyvirustobaccova resistance

Identifiers

PMID31115167
PMCPMC6640182
OpenAlexW2945366276

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.