Evidence map›Paper›PMID 31115151›Full record

ArticleMolecular plant pathology2019

Role of the Citrus sinensis RNA deadenylase CsCAF1 in citrus canker resistance.

Hugo Massayoshi Shimo, Carolina Terassi, Caio Cesar Lima Silva, Jackeline de Lima Zanella, Gustavo Fernando Mercaldi, Silvana Aparecida Rocco, Celso Eduardo Benedetti

Open access · goldAbstract read
In one paragraph

Article in Molecular plant pathology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. ThemSphere · 2025
    Article
  4. Article
  5. International journal of molecular sciences · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Citrus Genetic Engineering for Disease Resistance: Past, Present and Future.International journal of molecular sciences · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Hugo Massayoshi ShimoBrazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), CEP 13083-100, Campinas, SP, Brazil.
Carolina TerassiBrazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), CEP 13083-100, Campinas, SP, Brazil.
Caio Cesar Lima SilvaBrazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), CEP 13083-100, Campinas, SP, Brazil.
Jackeline de Lima ZanellaBrazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), CEP 13083-100, Campinas, SP, Brazil.
Gustavo Fernando MercaldiBrazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), CEP 13083-100, Campinas, SP, Brazil.
Silvana Aparecida RoccoBrazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), CEP 13083-100, Campinas, SP, Brazil.
Celso Eduardo BenedettiBrazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), CEP 13083-100, Campinas, SP, Brazil.ORCID 0000-0002-4602-0256
Brazilian Center for Research in Energy and Materials · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Poly(A) tail shortening is a critical step in messenger RNA (mRNA) decay and control of gene expression. The carbon catabolite repressor 4 (CCR4)-associated factor 1 (CAF1) component of the CCR4-NOT deadenylase complex plays an essential role in mRNA deadenylation in most eukaryotes. However, while CAF1 has been extensively investigated in yeast and animals, its role in plants remains largely unknown. Here, we show that the Citrus sinensis CAF1 (CsCAF1) is a magnesium-dependent deadenylase implicated in resistance against the citrus canker bacteria Xanthomonas citri. CsCAF1 interacted with proteins of the CCR4-NOT complex, including CsVIP2, a NOT2 homologue, translin-associated factor X (CsTRAX) and the poly(A)-binding proteins CsPABPN and CsPABPC. CsCAF1 also interacted with PthA4, the main X. citri effector required for citrus canker elicitation. We also present evidence suggesting that PthA4 inhibits CsCAF1 deadenylase activity in vitro and stabilizes the mRNA encoded by the citrus canker susceptibility gene CsLOB1, which is transcriptionally activated by PthA4 during canker formation. Moreover, we show that an inhibitor of CsCAF1 deadenylase activity significantly enhanced canker development, despite causing a reduction in PthA4-dependent CsLOB1 transcription. These results thus link CsCAF1 with canker development and PthA4-dependent transcription in citrus plants.

Indexed as

Amino Acid SequenceBacterial ProteinsCitrus sinensisDisease ResistanceGene Expression Regulation, PlantMagnesiumPlant DiseasesPlant ProteinsPoly AProtein BindingPyrazolesRibonucleasesRNA StabilityTranscription, GeneticXanthomonasBacterial ProteinsMagnesiummRNA deadenylasePlant ProteinsPoly APyrazolesRibonucleasesCCR4-NOT-associated factorcitrus cankerCitrus sinensisCsCAF1CsLOB1PthA4RNA deadenylase activityTAL effectorsXanthomonas aurantifoliiXanthomonas citri

Identifiers

PMID31115151
PMCPMC6640180
OpenAlexW2946588671

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.