Evidence map›Paper›PMID 31114855›Full record

ArticleGenome biology and evolution2019

The Genomic Complexity of a Large Inversion in Great Tits.

Vinicius H da Silva, Veronika N Laine, Mirte Bosse, Lewis G Spurgin, Martijn F L Derks, Kees van Oers, Bert Dibbits, Jon Slate, Richard P M A Crooijmans, Marcel E Visser and 1 more

Abstract read
In one paragraph

Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Iterative evolution of supergene-based social polymorphism in ants.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Vinicius H da SilvaAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Veronika N LaineDepartment of Molecular and Cellular Biology, Harvard University.
Mirte BosseAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Lewis G SpurginSchool of Biological Sciences, University of East Anglia, Norwich Research Park University of East Anglia, Norwich, United Kingdom.
Martijn F L DerksAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Kees van OersDepartment of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
Bert DibbitsAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Jon SlateDepartment of Animal and Plant Sciences, The University of Sheffield, Sheffield, United Kingdom.
Richard P M A CrooijmansAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Marcel E VisserAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.
Martien A M GroenenAnimal Breeding and Genomics, Wageningen University & Research, Wageningen, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromosome inversions have clear effects on genome evolution and have been associated with speciation, adaptation, and the evolution of the sex chromosomes. In birds, these inversions may play an important role in hybridization of species and disassortative mating. We identified a large (≈64 Mb) inversion polymorphism in the great tit (Parus major) that encompasses almost 1,000 genes and more than 90% of Chromosome 1A. The inversion occurs at a low frequency in a set of over 2,300 genotyped great tits in the Netherlands with only 5% of the birds being heterozygous for the inversion. In an additional analysis of 29 resequenced birds from across Europe, we found two heterozygotes. The likely inversion breakpoints show considerable genomic complexity, including multiple copy number variable segments. We identified different haplotypes for the inversion, which differ in the degree of recombination in the center of the chromosome. Overall, this remarkable genetic variant is widespread among distinct great tit populations and future studies of the inversion haplotype, including how it affects the fitness of carriers, may help to understand the mechanisms that maintain it.

Indexed as

AnimalsChromosome MappingEvolution, MolecularGenomicsGenotypeHaplotypesHeterozygoteSongbirdsCNVsParus majorsongbirdstructural variation

Identifiers

PMID31114855
PMCPMC6609730

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.