Evidence map›Paper›PMID 31113953›Full record

ArticleNature communications2019

ZFYVE21 is a complement-induced Rab5 effector that activates non-canonical NF-κB via phosphoinosotide remodeling of endosomes.

Caodi Fang, Thomas D Manes, Lufang Liu, Kevin Liu, Lingfeng Qin, Guangxin Li, Zuzana Tobiasova, Nancy C Kirkiles-Smith, Manal Patel, Jonathan Merola and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
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  5. Targeting ubiquitination in disease and therapy.Signal transduction and targeted therapy · 2025
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  6. Roles of endothelial cells during infection.Current opinion in immunology · 2025
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  11. Distinct early role of PTEN regulation during HCMV infection of monocytes.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 2 countries.

Caodi FangDivision of Cardiovascular Medicine, Yale University School of Medicine, New Haven, CT, 06520, USA.
Thomas D ManesDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, 06520, USA.
Lufang LiuDivision of Cardiovascular Medicine, Yale University School of Medicine, New Haven, CT, 06520, USA.
Kevin LiuDivision of Cardiovascular Medicine, Yale University School of Medicine, New Haven, CT, 06520, USA.ORCID http://orcid.org/0000-0003-3017-1719
Lingfeng QinDepartment of Surgery, Yale University School of Medicine, New Haven, CT, 06520, USA.
Guangxin LiDepartment of Surgery, Yale University School of Medicine, New Haven, CT, 06520, USA.
Zuzana TobiasovaDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, 06520, USA.
Nancy C Kirkiles-SmithDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, 06520, USA.
Manal PatelSt. John's College, University of Cambridge, Cambridge, CB2 1TP, UK.ORCID http://orcid.org/0000-0001-7438-2468
Jonathan MerolaDepartment of Surgery, Yale University School of Medicine, New Haven, CT, 06520, USA.
Whitney FuDivision of Cardiovascular Medicine, Yale University School of Medicine, New Haven, CT, 06520, USA.ORCID http://orcid.org/0000-0002-6935-9121
Rebecca LiuDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, 06520, USA.
Catherine XieDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, 06520, USA.
Gregory T TietjenDepartment of Surgery, Yale University School of Medicine, New Haven, CT, 06520, USA.
Peter A NigrovicDivision of Rheumatology, Immunology and Allergy, Brigham and Women's Hospital and Division of Immunology, Boston Children's Hospital, Boston, MA, 02115, USA.
George TellidesDepartment of Surgery, Yale University School of Medicine, New Haven, CT, 06520, USA.
Jordan S PoberDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, 06520, USA.
Dan Jane-WitDivision of Cardiovascular Medicine, Yale University School of Medicine, New Haven, CT, 06520, USA. dan.jane-wit@yale.edu.
Yale University · USBrigham and Women's Hospital · USUniversity of Cambridge · GB

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Presentation of Alloantigen by Human Vascular CellsR01HL051014 · NHLBI · YALE UNIVERSITY · PI MANES, THOMAS DAVID, POBER, JORDAN S · 1994 to 2019
$10.4M
Joint Biology Consortium Resource-based CenterP30AR070253 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Peter A Nigrovic, Jeffrey Andrew Sparks · 2016 to 2026
$9.4M
Yale Rheumatic Diseases Research Core CenterP30AR053495 · NIAMS · YALE UNIVERSITY · PI SHLOMCHIK, MARK J · 2007 to 2017
$7.0M
Ly6 family members in neutrophil biologyR01AR065538 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI NIGROVIC, PETER A · 2014 to 2024
$4.0M
THE ROLE OF ZFYVE21 IN CEREBRAL AMYLOID ANGIOPATHY IN ALZHEIMER'S DISEASER01HL141137 · NHLBI · YALE UNIVERSITY · PI JANE-WIT, DANIEL · 2018 to 2022
$2.6M
Mechanisms of Non-Canonical NF-kB Activation in Transplant ArteriosclerosisR00HL125895 · NHLBI · YALE UNIVERSITY · PI JANE-WIT, DANIEL · 2017 to 2019
$732k
A super-resolution microscope for research and educationS10OD020142 · OD · YALE UNIVERSITY · PI NATHANSON, MICHAEL H · 2015 to 2015
$600k
Complement Induces Inflammasome Assembly in Human Endothelium: Mechanisms and Consequences for Graft RejectionF30AI138473 · NIAID · YALE UNIVERSITY · PI XIE, CATHERINE BINGCHAN · 2018 to 2021
$140k
AbbVie (AbbVie Inc.) YAP-005-2013NCATS NIH HHS UL1 TR001863NHLBI NIH HHS R00 HL125895NHLBI NIH HHS R01 HL051014NHLBI NIH HHS R01 HL141137NIAID NIH HHS F30 AI138473NIAMS NIH HHS P30 AR053495NIAMS NIH HHS P30 AR070253NIAMS NIH HHS R01 AR065538NIH HHS S10 OD020142U.S. Department of Health & Human Services | NIH | National Center for Advancing Translational Sciences (NCATS) UL1TR001863U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R00HL125895U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01-HL051014U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01HL141137-01U.S. Department of Health & Human Services | NIH | National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS) P30AR070253Vasculitis Foundation (Vasculitis) P30AR053495-01A1
6 · The paper itself

Abstract

Complement promotes vascular inflammation in transplant organ rejection and connective tissue diseases. Here we identify ZFYVE21 as a complement-induced Rab5 effector that induces non-canonical NF-κB in endothelial cells (EC). In response to membrane attack complexes (MAC), ZFYVE21 is post-translationally stabilized on MAC+Rab5+ endosomes in a Rab5- and PI(3)P-dependent manner. ZFYVE21 promotes SMURF2-mediated polyubiquitinylation and proteasome-dependent degradation of endosome-associated PTEN to induce vesicular enrichment of PI(3,4,5)P3 and sequential recruitment of activated Akt and NF-κB-inducing kinase (NIK). Pharmacologic alteration of cellular phosphoinositide content with miltefosine reduces ZFYVE21 induction, EC activation, and allograft vasculopathy in a humanized mouse model. ZFYVE21 induction distinctly occurs in response to MAC and is detected in human renal and synovial tissues. Our data identifies ZFYVE21 as a Rab5 effector, defines a Rab5-ZFYVE21-SMURF2-pAkt axis by which it mediates EC activation, and demonstrates a role for this pathway in complement-mediated conditions.

Indexed as

AllograftsAnimalsCarrier ProteinsCell LineComplement Membrane Attack ComplexCoronary VesselsDisease Models, AnimalEndosomesFemaleGraft RejectionHumansHuman Umbilical Vein Endothelial CellsIntracellular Signaling Peptides and ProteinsMembrane ProteinsMiceMice, SCIDCarrier ProteinsComplement Membrane Attack ComplexIntracellular Signaling Peptides and ProteinsMembrane ProteinsNF-kappa BPhosphatidylinositol PhosphatesRAB5C protein, humanrab5 GTP-Binding ProteinsSMURF2 protein, humanUbiquitin-Protein LigasesZFYVE21 protein, human

Identifiers

PMID31113953
PMCPMC6529429
OpenAlexW2945186082

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.