Evidence map›Paper›PMID 31113365›Full record

ArticleBMC genomics2019

lncRNA profile of Apis mellifera and its possible role in behavioural transition from nurses to foragers.

Fang Liu, Tengfei Shi, Lei Qi, Xin Su, Deqian Wang, Jie Dong, Zachary Y Huang

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
9.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 56 citations in OpenAlex.

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  8. Regulation of insect behavior by non-coding RNAs.Science China. Life sciences · 2024
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  11. MicroRNA Targets PAP1 to Mediate Melanization inInternational journal of molecular sciences · 2024
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  14. Transcriptomic Analysis ofInternational journal of molecular sciences · 2023
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  15. Recent Advances and Future Potential of Long Non-Coding RNAs in Insects.International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Fang LiuCollege of Animal Science and Technology, Anhui Agricultural University, Hefei, 230000, Anhui, China.
Tengfei ShiCollege of Animal Science and Technology, Anhui Agricultural University, Hefei, 230000, Anhui, China.
Lei QiCollege of Animal Science and Technology, Anhui Agricultural University, Hefei, 230000, Anhui, China.
Xin SuCollege of Animal Science and Technology, Anhui Agricultural University, Hefei, 230000, Anhui, China.
Deqian WangInstitute of Animal Husbandry and Veterinary Medicine, Zhejiang Academy of Agricultural Sciences, Zhejiang, 310021, Hangzhou, China. wangdeqian2002@sohu.com.
Jie DongInstitute of Animal Husbandry and Veterinary Medicine, Zhejiang Academy of Agricultural Sciences, Zhejiang, 310021, Hangzhou, China.
Zachary Y HuangDepartment of Entomology, Michigan State University, East Lansing, MI, 48824, USA. bees@msu.edu.
Anhui Agricultural University · CNZheJiang Academy of Agricultural Sciences · CNMichigan State University · US

Funding

National Natural Science Foundation of China 31302039University Natural Science Research Project of Anhui Province KJ2018A0138
6 · The paper itself

Abstract

backgroundThe behavioural transition from nurses to foragers in honey bees is known to be affected by intrinsic and extrinsic factors, including colony demography, hormone levels, brain chemistry and structure, and gene expression in the brain. However, the molecular mechanism underlying this behavioural transition of honey bees is still obscure.

resultsThrough RNA sequencing, we performed a comprehensive analysis of lncRNAs and mRNAs in honey bee nurses and foragers. Nurses and foragers from both typical colonies and single-cohort colonies were used to prepare six libraries to generate 49 to 100 million clear reads per sample. We obtained 6863 novel lncRNAs, 1480 differentially expressed lncRNAs between nurses and foragers, and 9308 mRNAs. Consistent with previous studies, lncRNAs showed features distinct from mRNAs, such as shorter lengths, lower exon numbers, and lower expression levels compared to mRNAs. Bioinformatic analysis showed that differentially expressed genes were mostly involved in the regulation of sensory-related events, such as olfactory receptor activity and odorant binding, and enriched Wnt and FoxO signaling pathways. Moreover, we found that lncRNAs TCONS_00356023, TCONS_00357367, TCONS_00159909 and mRNAs dop1, Kr-h1 and HR38 may play important roles in behavioural transition in honey bees.

conclusionThis study characterized the expression profile of lncRNAs in nurses and foragers and provided a framework for further study of the role of lncRNAs in honey bee behavioural transition.

Indexed as

AnimalsBeesBehavior, AnimalGene Expression ProfilingRNA, Long NoncodingRNA, MessengerSequence Analysis, RNARNA, Long NoncodingRNA, MessengerBehavioural transitionForagerslncRNAmRNANurses

Identifiers

PMID31113365
PMCPMC6528240
OpenAlexW2947102518

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.