Evidence map›Paper›PMID 31112700›Full record

ReviewDevelopmental cell2019

Morpholinos Do Not Elicit an Innate Immune Response during Early Xenopus Embryogenesis.

Kitt D Paraiso, Ira L Blitz, Jeff J Zhou, Ken W Y Cho

Open access · bronzeAbstract readReview
In one paragraph

Review in Developmental cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Met regulates endoderm migration in zebrafish.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. The dishevelled associated activator of morphogenesis protein 2 (Daam2) regulates neural tube closure.Developmental dynamics : an official publication of the American Association of Anatomists · 2024
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kitt D ParaisoDevelopmental and Cell Biology, University of California, Irvine, CA, USA; Center for Complex Biological Systems, University of California, Irvine, CA, USA.
Ira L BlitzDevelopmental and Cell Biology, University of California, Irvine, CA, USA.
Jeff J ZhouDevelopmental and Cell Biology, University of California, Irvine, CA, USA.
Ken W Y ChoDevelopmental and Cell Biology, University of California, Irvine, CA, USA; Center for Complex Biological Systems, University of California, Irvine, CA, USA. Electronic address: kwcho@uci.edu.
University of California, Irvine · US

Funding

Mechanisms of Foxh1 pioneer factor action during mesendoderm developmentR01GM126395 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI CHO, KEN W.Y. · 2017 to 2020
$1.6M
Training Program in Systems Biology of DevelopmentT32HD060555 · NICHD · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D · 2009 to 2013
$1.3M
NICHD NIH HHS T32 HD060555NIGMS NIH HHS R01 GM126395
6 · The paper itself

Abstract

It has recently been reported that a common side effect of translation-blocking morpholino antisense oligonucleotides is the induction of a set of innate immune response genes in Xenopus embryos and that splicing-blocking morpholinos lead to unexpected off-target mis-splicing events. Here, we present an analysis of all publicly available Xenopus RNA sequencing (RNA-seq) data in a reexamination of the effects of translation-blocking morpholinos on the innate immune response. Our analysis does not support the authors' general conclusion, which was based on a limited number of RNA-seq datasets. Moreover, the strong induction of an immune response appears to be specific to the tbxt/tbxt2 morpholinos. The more comprehensive study presented here indicates that using morpholinos for targeted gene knockdowns remains of considerable value for the rapid identification of gene function.

Indexed as

AnimalsEmbryonic DevelopmentGene Knockdown TechniquesImmunity, InnateMorpholinosOligonucleotides, AntisenseRNA SplicingT-Box Domain ProteinsTranscriptomeXenopusXenopus laevisXenopus ProteinsMorpholinosOligonucleotides, AntisenseT-Box Domain ProteinsTBXT protein, XenopusXenopus Proteinsbrachyurygene knockdowninnate immune responseloss of functionreverse geneticstbxttranslation blocking morpholinoXenopuszebrafish

Identifiers

PMID31112700
PMCPMC6599594
OpenAlexW2946210150

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.