Evidence map›Paper›PMID 31112614›Full record

ArticleInflammatory bowel diseases2019

Characterization of Stool Virome in Children Newly Diagnosed With Moderate to Severe Ulcerative Colitis.

Rafal Tokarz, Jeffrey S Hyams, David R Mack, Brendan Boyle, Anne M Griffiths, Neal S LeLeiko, Cary G Sauer, Sapana Shah, James Markowitz, Susan S Baker and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Inflammatory bowel diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. Observational
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Host-Viral Interactions in the Pathogenesis of Ulcerative Colitis.International journal of molecular sciences · 2021
    Review
  9. Review
  10. Review
  11. Review
  12. Virome Sequencing of the Human Intestinal Mucosal-Luminal Interface.Frontiers in cellular and infection microbiology · 2020
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 13 institutions in 2 countries.

Rafal TokarzCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, NY, USA.
Jeffrey S HyamsConnecticut Children's Medical Center, Hartford, CT, USA.
David R MackChildren's Hospital of Eastern Ontario, University of Ottawa, Ottawa, Ontario, Canada.
Brendan BoyleNationwide Children's Hospital, Columbus, OH, USA.
Anne M GriffithsHospital For Sick Children, Toronto, Canada.
Neal S LeLeikoHasbro Children's Hospital, Providence, RI, USA.
Cary G SauerEmory University, Atlanta, GA, USA.
Sapana ShahChildren's Hospital of Pittsburgh, Pittsburgh, PA, USA.
James MarkowitzCohen Children's Medical Center of New York, New Hyde Park, NY, USA.
Susan S BakerWomen & Children's Hospital of Buffalo WCHOB, Buffalo, NY, USA.
Joel RoshGoryeb Children's Hospital, Atlantic Health, Morristown, NJ, USA.
Robert N BaldassanoThe Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Subra KugathasanEmory University, Atlanta, GA, USA.
Thomas WaltersHospital For Sick Children, Toronto, Canada.
Teresa TagliafierroCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, NY, USA.
Stephen SameroffCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, NY, USA.
Bohyun LeeCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, NY, USA.
Xiaoyu CheCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, NY, USA.
Alexandra OleynikCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, NY, USA.
Lee A DensonEmory University, Atlanta, GA, USA.
W Ian LipkinCincinnati Children's Hospital Medical Center and the University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Columbia University · USEmory University · USHospital for Sick Children · CAChildren's Hospital of Philadelphia · USChildren's Hospital of Pittsburgh · USCohen Children's Medical Center · USConnecticut Children's Medical Center · USGoryeb Children's Hospital · USNationwide Children's Hospital · USProvidence College · USUniversity of Cincinnati · USUniversity of Ottawa · CAWomen & Children's Hospital of Buffalo · US

Funding

Predicting Response to Standardized Pediatric Colitis Therapy: PROTECT StudyU01DK095745 · NIDDK · CONNECTICUT CHILDREN'S MEDICAL CENTER · PI DENSON, LEE ARMISTEAD, HYAMS, JEFFREY SAMUEL · 2012 to 2016
$10.4M
NIDDK NIH HHS U01 DK095745
6 · The paper itself

Abstract

backgroundViral infections have been suggested as possible triggers for the onset of ulcerative colitis (UC).

methodsWe employed VirCapSeq-Vert, a high-throughput sequencing virus capture platform, to examine the stool virome of children with newly diagnosed moderate to severe UC. We surveyed fecal samples collected at presentation, after symptom remission, and from a control group diagnosed with irritable bowel syndrome.

resultsSeventy subjects with UC (mean age 13 years, 45 had moderate symptoms, 25 had severe, 69 of 70 had a Mayo endoscopy subscore 2/3) were studied. We detected a wide range of animal viruses that were taxonomically classified into 12 viral families. A virus was present in 50% of fecal samples collected at presentation, 41% of samples collected after remission, and 40% of samples in our control group. The most frequently identified viruses were diet-based gyroviruses. The UC cohort had a significantly higher prevalence of anelloviruses compared with the control cohort. However, we did not identify a single virus that can be implicated in the onset of UC and did not find an association between UC disease severity and viral presence.

conclusionPresence of virus in stool was not associated with the onset of pediatric UC.

Indexed as

AdolescentCase-Control StudiesChildChild, PreschoolColitis, UlcerativeDNA, ViralFecesFemaleFollow-Up StudiesHigh-Throughput Nucleotide SequencingHumansMalePrevalencePrognosisSeverity of Illness IndexUnited StatesDNA, Viralchildrenulcerative colitisvirome

Identifiers

PMID31112614
PMCPMC7108593
OpenAlexW2945937914

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.