Evidence map›Paper›PMID 31112574›Full record

ArticlePloS one2019

Physiological and transcriptomic analysis of yellow leaf coloration in Populus deltoides Marsh.

Shuzhen Zhang, Xiaolu Wu, Jie Cui, Fan Zhang, Xueqin Wan, Qinglin Liu, Yu Zhong, Tiantian Lin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

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  13. Physiological analysis and transcriptome sequencing of a delayed-green leaf mutant 'Duojiao' of ornamental crabapple (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
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  16. Comparative transcriptome analysis identifiedFrontiers in plant science · 2022
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  17. Plant Secondary Metabolites with an Overview ofInternational journal of molecular sciences · 2021
    Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Shuzhen ZhangCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, China.
Xiaolu WuCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, China.
Jie CuiCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, China.
Fan ZhangCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, China.ORCID 0000-0001-9432-6711
Xueqin WanCollege of Forestry of Sichuan Agricultural University, Chengdu, Sichuan, China.
Qinglin LiuCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, China.
Yu ZhongCollege of Forestry of Sichuan Agricultural University, Chengdu, Sichuan, China.
Tiantian LinCollege of Forestry of Sichuan Agricultural University, Chengdu, Sichuan, China.
Sichuan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Populus deltoides Marsh has high ornamental value because its leaves remain yellow during the non-dormant period. However, little is known about the regulatory mechanism of leaf coloration in P. deltoides Marsh. Thus, we analyzed the physiological and transcriptional differences of yellow leaves (mutant) and green leaves (wild-type) of P. deltoides Marsh. Physiological experiments showed that the contents of chlorophyll (Chl) and carotenoid were lower in mutant leaves, and the flavonoid content did not differ significantly between mutant and wild-type leaves. Transcriptomic sequencing was further used to identify 153 differentially expressed genes (DEGs). Functional classifications based on Gene Ontology enrichment and Genome enrichment analysis indicated that the DEGs were involved in Chl biosynthesis and flavonoid biosynthesis pathways. Among these, geranylgeranyl diphosphate (CHLP) genes associated with Chl biosynthesis showed down-regulation, while chlorophyllase (CLH) genes associated with Chl degradation were up-regulated in yellow leaves. The expression levels of these genes were further confirmed using quantitative real-time PCR (RT-qPCR). Furthermore, the estimation of the main precursors of Chl confirmed that CHLP is a vital enzyme for the yellow leaf color phenotype. Consequently, the formation of yellow leaf color is due to the disruption of Chl synthesis or catabolism rather than flavonoid synthesis. These results contribute to our understanding of mechanisms and regulation of leaf color variation in poplar at the transcriptional level.

Indexed as

WetlandsGene Expression ProfilingGene Expression Regulation, PlantPigmentationPlant LeavesPlant ProteinsPopulusTranscriptomePlant Proteins

Identifiers

PMID31112574
PMCPMC6529213
OpenAlexW2944912212

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.