Evidence map›Paper›PMID 31112524›Full record

ArticleJCI insight2019

Mutational landscape in genetically engineered, carcinogen-induced, and radiation-induced mouse sarcoma.

Chang-Lung Lee, Yvonne M Mowery, Andrea R Daniel, Dadong Zhang, Alexander B Sibley, Joe R Delaney, Amy J Wisdom, Xiaodi Qin, Xi Wang, Isibel Caraballo and 5 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 58 citations in OpenAlex.

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  18. On the Relevance of Soft Tissue Sarcomas Metabolic Landscape Mapping.International journal of molecular sciences · 2022
    Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Chang-Lung Lee
Yvonne M Mowery
Andrea R Daniel
Dadong Zhang
Alexander B Sibley
Joe R Delaney
Amy J Wisdom
Xiaodi Qin
Xi Wang
Isibel Caraballo
Jeremy Gresham
Lixia Luo
David Van Mater
Kouros Owzar
David G Kirsch
Cancer Institute (WIA) · INDuke University · USMedical University of South Carolina · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI JOHN N. NORTON · 1985 to 2026
$174.8M
Somatostatin analogues as countermeasures against intestinal radiation toxicityU19AI067798 · NIAID · DUKE UNIVERSITY · PI DOAN, PHUONG LINH · 2005 to 2024
$82.1M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007171 · NIGMS · DUKE UNIVERSITY · PI KONTOS, CHRISTOPHER D · 1985 to 2021
$31.2M
Tissue and Pathology ResourcesU54CA168512 · NCI · SARC · PI REINKE, DENISE · 2012 to 2016
$11.0M
Advancing Cancer Therapy through Ground Breaking Research in Radiation BiologyR35CA197616 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI David Guy Kirsch · 2016 to 2026
$10.7M
Ionizing radiation promotes clonal expansion of premalignant cells in the thymusR00CA212198 · NCI · DUKE UNIVERSITY · PI LEE, CHANG-LUNG · 2018 to 2020
$747k
Copy Number Alterations in Low Mutation CancerR00CA207729 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI DELANEY, JOE R · 2019 to 2021
$730k
Data commons for 'omic, microscopy and analysis core facilitiesS10OD018164 · OD · DUKE UNIVERSITY · PI WRAY, GREGORY A. · 2014 to 2014
$598k
Copy Number Alterations in Low Mutation CancerK99CA207729 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DELANEY, JOE R · 2017 to 2018
$230k
Dissecting mechanism(s) by which ionizing radiation promotes clonal expansion of premalignant cells in the thymusK99CA212198 · NCI · DUKE UNIVERSITY · PI LEE, CHANG-LUNG · 2016 to 2017
$229k
Dissecting the role of the immune system in the radiation response of Kras-mutant tumorsF30CA221268 · NCI · DUKE UNIVERSITY · PI WISDOM, AMY JORDAN · 2017 to 2020
$154k
NCI NIH HHS F30 CA221268NCI NIH HHS K99 CA207729NCI NIH HHS K99 CA212198NCI NIH HHS P30 CA014236NCI NIH HHS R00 CA207729NCI NIH HHS R00 CA212198NCI NIH HHS R35 CA197616NCI NIH HHS U54 CA168512NIAID NIH HHS U19 AI067798NIGMS NIH HHS T32 GM007171NIH HHS S10 OD018164
6 · The paper itself

Abstract

Cancer development is influenced by hereditary mutations, somatic mutations due to random errors in DNA replication, or external factors. It remains unclear how distinct cell-intrinsic and -extrinsic factors impact oncogenesis within the same tissue type. We investigated murine soft tissue sarcomas generated by oncogenic alterations (KrasG12D activation and p53 deletion), carcinogens (3-methylcholanthrene [MCA] or ionizing radiation), and in a novel model combining both factors (MCA plus p53 deletion). Whole-exome sequencing demonstrated distinct mutational signatures in individual sarcoma cohorts. MCA-induced sarcomas exhibited high mutational burden and predominantly G-to-T transversions, while radiation-induced sarcomas exhibited low mutational burden and a distinct genetic signature characterized by C-to-T transitions. The indel to substitution ratio and amount of gene copy number variations were high for radiation-induced sarcomas. MCA-induced tumors generated on a p53-deficient background showed the highest genomic instability. MCA-induced sarcomas harbored mutations in putative cancer-driver genes that regulate MAPK signaling (Kras and Nf1) and the Hippo pathway (Fat1 and Fat4). In contrast, radiation-induced sarcomas and KrasG12Dp53-/- sarcomas did not harbor recurrent oncogenic mutations, rather they exhibited amplifications of specific oncogenes: Kras and Myc in KrasG12Dp53-/- sarcomas, and Met and Yap1 for radiation-induced sarcomas. These results reveal that different initiating events drive oncogenesis through distinct mechanisms.

Indexed as

AnimalsCarcinogenesisCarcinogensDNA Mutational AnalysisExome SequencingGenomic InstabilityHumansMethylcholanthreneMiceNeoplasms, ExperimentalNeoplasms, Radiation-InducedOncogenesProto-Oncogene Proteins p21(ras)SarcomaTumor Suppressor Protein p53CarcinogensHras protein, mouseMethylcholanthreneProto-Oncogene Proteins p21(ras)Trp53 protein, mouseTumor Suppressor Protein p53CancerGeneticsMolecular geneticsOncogenesOncology

Identifiers

PMID31112524
PMCPMC6629293
OpenAlexW2945008192

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.