Evidence map›Paper›PMID 31110502›Full record

ArticleFrontiers in immunology2019

RNAseq Profiling of Leukocyte Populations in Zebrafish Larvae Reveals a

Julien Rougeot, Vincenzo Torraca, Ania Zakrzewska, Zakia Kanwal, Hans J Jansen, Frida Sommer, Herman P Spaink, Annemarie H Meijer

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 102 citations in OpenAlex.

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  17. ptx3aCell reports · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Julien RougeotInstitute of Biology Leiden, Leiden University, Leiden, Netherlands.
Vincenzo TorracaInstitute of Biology Leiden, Leiden University, Leiden, Netherlands.
Ania ZakrzewskaInstitute of Biology Leiden, Leiden University, Leiden, Netherlands.
Zakia KanwalInstitute of Biology Leiden, Leiden University, Leiden, Netherlands.
Hans J JansenZF-screens B. V., Leiden, Netherlands.
Frida SommerInstitute of Biology Leiden, Leiden University, Leiden, Netherlands.
Herman P SpainkInstitute of Biology Leiden, Leiden University, Leiden, Netherlands.
Annemarie H MeijerInstitute of Biology Leiden, Leiden University, Leiden, Netherlands.
Leiden University · NLZF Screens (Netherlands) · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Macrophages are phagocytic cells from the innate immune system, which forms the first line of host defense against invading pathogens. These highly dynamic immune cells can adopt specific functional phenotypes, with the pro-inflammatory M1 and anti-inflammatory M2 polarization states as the two extremes. Recently, the process of macrophage polarization during inflammation has been visualized by real time imaging in larvae of the zebrafish. This model organism has also become widely used to study macrophage responses to microbial pathogens. To support the increasing use of zebrafish in macrophage biology, we set out to determine the complete transcriptome of zebrafish larval macrophages. We studied the specificity of the macrophage signature compared with other larval immune cells and the macrophage-specific expression changes upon infection. We made use of the well-established

Indexed as

AnimalsBiomarkersChemokine CXCL11Immunity, InnateLarvaLeukocytesMacrophage ActivationMacrophagesMycobacterium InfectionsMycobacterium marinumNeutrophilsPhagocytesSignal TransductionZebrafishZebrafish ProteinsBiomarkersChemokine CXCL11Zebrafish Proteinsinnate immunitylymphoid progenitor cellsmacrophagemycobacterianeutrophilRNAseqzebrafish

Identifiers

PMID31110502
PMCPMC6499218
OpenAlexW2950794265

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.