Evidence map›Paper›PMID 31110186›Full record

ArticleNature communications2019

Engram-specific transcriptome profiling of contextual memory consolidation.

Priyanka Rao-Ruiz, Jonathan J Couey, Ivo M Marcelo, Christian G Bouwkamp, Denise E Slump, Mariana R Matos, Rolinka J van der Loo, Gabriela J Martins, Mirjam van den Hout, Wilfred F van IJcken and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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  20. Epigenetics in Learning and Memory.Sub-cellular biochemistry · 2025
    Review

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Priyanka Rao-RuizDepartment of Psychiatry, Erasmus MC University Medical Center, Rotterdam, 3015 GD, The Netherlands.ORCID http://orcid.org/0000-0001-9504-1427
Jonathan J CoueyDepartment of Psychiatry, Erasmus MC University Medical Center, Rotterdam, 3015 GD, The Netherlands.
Ivo M MarceloDepartment of Psychiatry, Erasmus MC University Medical Center, Rotterdam, 3015 GD, The Netherlands.
Christian G BouwkampDepartment of Psychiatry, Erasmus MC University Medical Center, Rotterdam, 3015 GD, The Netherlands.
Denise E SlumpDepartment of Psychiatry, Erasmus MC University Medical Center, Rotterdam, 3015 GD, The Netherlands.
Mariana R MatosDepartment of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, 1081 HV, The Netherlands.
Rolinka J van der LooDepartment of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, 1081 HV, The Netherlands.
Gabriela J MartinsChampalimaud Neuroscience Programme, Champalimaud Centre for the Unknown, Lisbon, 1400-038, Portugal.
Mirjam van den HoutCenter for Biomics, Erasmus MC University Medical Center, Rotterdam, 3015 GD, The Netherlands.ORCID http://orcid.org/0000-0003-2412-7631
Wilfred F van IJckenCenter for Biomics, Erasmus MC University Medical Center, Rotterdam, 3015 GD, The Netherlands.ORCID http://orcid.org/0000-0002-0421-8301
Rui M CostaChampalimaud Neuroscience Programme, Champalimaud Centre for the Unknown, Lisbon, 1400-038, Portugal.
Michel C van den OeverDepartment of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, 1081 HV, The Netherlands. michel.vanden.oever@vu.nl.ORCID http://orcid.org/0000-0001-5523-8612
Steven A KushnerDepartment of Psychiatry, Erasmus MC University Medical Center, Rotterdam, 3015 GD, The Netherlands. s.kushner@erasmusmc.nl.ORCID http://orcid.org/0000-0002-9777-3338

Funding

ZonMw (Netherlands Organisation for Health Research and Development) 40-00506-9810026ZonMw (Netherlands Organisation for Health Research and Development) 40-00812-98-15030
6 · The paper itself

Abstract

Sparse populations of neurons in the dentate gyrus (DG) of the hippocampus are causally implicated in the encoding of contextual fear memories. However, engram-specific molecular mechanisms underlying memory consolidation remain largely unknown. Here we perform unbiased RNA sequencing of DG engram neurons 24 h after contextual fear conditioning to identify transcriptome changes specific to memory consolidation. DG engram neurons exhibit a highly distinct pattern of gene expression, in which CREB-dependent transcription features prominently (P = 6.2 × 10

Indexed as

Activating Transcription Factor 3AnimalsConditioning, PsychologicalCyclic AMP Response Element-Binding ProteinCytoskeletal ProteinsDentate GyrusEnkephalinsFearGene Expression ProfilingGene Expression RegulationKCNQ3 Potassium ChannelMaleMemory ConsolidationMiceMice, Inbred C57BLMice, TransgenicActivating Transcription Factor 3activity regulated cytoskeletal-associated proteinAtf3 protein, mouseCreb1 protein, mouseCyclic AMP Response Element-Binding ProteinCytoskeletal ProteinsEnkephalinsKCNQ3 Potassium ChannelKcnq3 protein, mouseNerve Tissue ProteinspreproenkephalinProtein Precursors

Identifiers

PMID31110186
PMCPMC6527697

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.